Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00779 ATGGGAGGTGACGCTACTACCGCTGAGACTGCCACATCAGAGTCCAACACCGCCGGAGTCAACATCAACATTCGTTGCTCCAATGGCTCAAAGTTTTCCGTCCAGATTAGTCTGGATTCCCTGGTCAGATCTTTCAAAGACGTTGTGGCTCGCAACTGTGACATCCCCGCTGATCAACAGCGTCTGATTTATAAGGGTCGGATCCTCAAGGATGATCAAACCCTCCAAAGCTACGGTTTGGAGGCTGATCACACTGTCCACTTGGTTCGTGGCTTTGCTCCTTCTAACAACACTGGTGGGACTAATGGTGGTGGTGCCAATACCACAACAGCCAATACCACGAGGAGTGCTGGTGCTAATGAGGGTGGGGGTTTAGGAGGGCCAGGATTTGGGGCTTCACTGTTTCCCGGACTTGGTGGTAACAATGGGATGGGGGGCAGTGGCCTCAATGGCTTATTTGGAGCGGGCTTTCCGGATCTTGAACAAATGCAGCAACCGCTTTTGTCAAACCCCAATTTAGTGAGAGATATAATGAACACACCTGCTATGCAGAATTTAATAAATAATCCGGAGATTGTGCGGAATCTTATAATGAATAATCCACAGATGCAAGAGTTAATGGATAGAAACCCTGAGCTGGCACACATACTTAATGATCCCAGCACTCTTCGTCAGACTCTTGAAGCTACGAGGAACCCTGAGATCATGCGCGAAATGATGAGGAATACAGACAGAGCAATGAGCAACATTGAATCTTCTCCTGAGGGATTCAACATGCTGAGACGCATGTATGAAAATGTTCAAGAACCATTTTTAAATGCCACTACAATGGCTGGTAATGCCGGAAATGATGGTGCAGTGGTCAGGAACCAATCAACTAATCCCTCAACTGCTAATTCTGAAGCAACTTCTCCTGTACCTAATACGAACCCACTTCCTAATCCATGGTCCTCTACTACTGGAACTGGAGGTGGCCAAAATAACACCAGAAGGCCAACTACGACTGGTGGGGATGCTCGACAGCAGGCACCCACTGGCTTAGGAGGGCTTGGACTGCCTGATCTCGAAGGCATGTTGGGTGGAATGCCGGATGCTGCTATGTTGACCCAGTTAATGCAAAATCCAGCGATTTCACAAATGATGCAAAGTATCCTTTCCAATCCACAGACTATGAATCAGATTCTTGGGGTCAACTCTGAGCAGCGTGGCATGCCTGATATGAATTCTCTAAGGGAGGTGATGCAAAACCCAGAGTTTTTACGACTGTTTTCCTCACCCGAGACACTGCAGCAACTCTTGTCTTTCCAGCAAGCACTTATGTCTCAGCTTGGTCAGCAACAATCAACACAGGAACCAGGTCAAACAGGTGTAGGCACTGGACCGATGAACAACATGGGACTGGAGATGTTATCGAGCATGTTTGGTGGACTTGGAGCTGGTAGCCTTGCTGTTCCTAACAGATCAAATGAGCCACCAGAGCAATTGTATGCCACCCAACTTTCTCAGCTTCAAGAGATGGGTTTCTTTGACACTCAAGAGAACATAAGGGCTCTTATTGCTACATCAGGGAACGTTCATGCAGCAGTTGAGCGGCTTTTGGGGAACTCCGGACAGTAG 1617 0.4793 MGGDATTAETATSESNTAGVNINIRCSNGSKFSVQISLDSLVRSFKDVVARNCDIPADQQRLIYKGRILKDDQTLQSYGLEADHTVHLVRGFAPSNNTGGTNGGGANTTTANTTRSAGANEGGGLGGPGFGASLFPGLGGNNGMGGSGLNGLFGAGFPDLEQMQQPLLSNPNLVRDIMNTPAMQNLINNPEIVRNLIMNNPQMQELMDRNPELAHILNDPSTLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTMAGNAGNDGAVVRNQSTNPSTANSEATSPVPNTNPLPNPWSSTTGTGGGQNNTRRPTTTGGDARQQAPTGLGGLGLPDLEGMLGGMPDAAMLTQLMQNPAISQMMQSILSNPQTMNQILGVNSEQRGMPDMNSLREVMQNPEFLRLFSSPETLQQLLSFQQALMSQLGQQQSTQEPGQTGVGTGPMNNMGLEMLSSMFGGLGAGSLAVPNRSNEPPEQLYATQLSQLQEMGFFDTQENIRALIATSGNVHAAVERLLGNSGQ 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00779 538 FunFam Ubiquitin domain-containing protein DSK2b 479 537 - -
Phco4g00779 538 Gene3D - 7 102 - -
Phco4g00779 538 MobiDBLite consensus disorder prediction 275 341 - -
Phco4g00779 538 FunFam Ubiquitin domain-containing protein DSK2b 17 103 - -
Phco4g00779 538 SUPERFAMILY UBA-like 492 534 IPR009060 GO:0005515
Phco4g00779 538 ProSiteProfiles Ubiquitin domain profile. 20 89 IPR000626 GO:0005515
Phco4g00779 538 MobiDBLite consensus disorder prediction 95 119 - -
Phco4g00779 538 SMART ubq_7 20 91 IPR000626 GO:0005515
Phco4g00779 538 CDD UBA_PLICs 496 534 - -
Phco4g00779 538 SMART CBM 146 187 IPR006636 -
Phco4g00779 538 SMART CBM 200 239 IPR006636 -
Phco4g00779 538 SMART CBM 352 394 IPR006636 -
Phco4g00779 538 SMART CBM 397 432 IPR006636 -
Phco4g00779 538 CDD Ubl_Dsk2p_like 20 92 - -
Phco4g00779 538 PANTHER UBIQUILIN 15 533 IPR015496 -
Phco4g00779 538 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 490 535 IPR015940 -
Phco4g00779 538 SMART uba_6 496 534 IPR015940 -
Phco4g00779 538 Pfam Ubiquitin family 22 89 IPR000626 GO:0005515
Phco4g00779 538 MobiDBLite consensus disorder prediction 275 350 - -
Phco4g00779 538 Pfam UBA/TS-N domain 496 532 IPR015940 -
Phco4g00779 538 SUPERFAMILY Ubiquitin-like 14 102 IPR029071 -
Phco4g00779 538 Gene3D - 478 538 - -
Phco4g00779 538 FunFam Ubiquitin domain-containing protein DSK2b 197 253 - -
Phco4g00779 538 MobiDBLite consensus disorder prediction 95 123 - -
Phco4g00779 538 Gene3D - 195 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00779 Phco-Chr4 5989615 5995103 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00779 4 5989615 5995103 Phco4g00779 4 5989615 5995103 ECH
Phco4g00779 4 5989615 5995103 Phco8g00335 8 3114025 3122974 PCT