Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00328 ATGTTTGTGAAGAAACTAGTTGAGAAAGCTTCCATCAAGAAGACTGGTGGAAATTCATCGGATGGATTAAAAGCTAGTGATGTAGATCCACGGTTGGTATTTCATCATGGGGTGCCATCTGGTGGTACCAATTTCGCCTATGACACCATACAGAGAATACTGGCTCTTTCTACAAAGGATGGCCAGATTAAACTCTATGGAAAAGATAATGCTCAAGCCATGCTTGAATCCAGTGAAGCCCAGCCTAGCAAGTTTCTGCAGTTCATCCAGAACCAAGGTGTCCTTATAAATGTTACTTCCAATGACCATATTGAGGTTTGGGACATAGACAAGAAATCGCTGTCTGATGTGTATATTGCTAAAGAAGAAATCACATGCTTTGTAGTCATTCAACATAGCCTCTATATGTACATCGGACATTCTAATGGTGATATTTCAGTTTTGATGCTTGATCAAGAACCATCATGGCGTTTGGTTAAGATGAAATACGTCATACCTGTCTCAGCTTCATATGGTAACTCTGAAGTGTCTGATGATACTGCTGTGACGCACGTACTGCCTCAACCAGTAGCTGAAAGTAAGAGGGTTCTCATAATCTTTAGAAATGGTCAAATGATATTATGGGATGTTCAGGAAAGTAGATCTATTTTAAGAACTGGTGGAAATAAGTTGCAGCCACTGCATAATGAAACAAAAAAAGTGACTTCGGCATGTTGGGTGTGTCCATTTGGAAGTAAAGTGGCTGTAGGGTACAACAACGGAGAGCTCTTCATTTGGAGAATCCCTCCTCTAAATATAGGAAATGGCTCAGCATCTGAATGTAGTAATCAAAACACTCCATTTCTCAAACTTAACTTAGGATACAAGTCAGACAAAATCTCCATAGGATCAATAAAATGGGTTTATGCTGGAGGAAAGGCTAGTCGACTATATGTTATGGGAGCTTCTGACTATGCAACTTCAAACTTGTTGCAGGTAGTGTTGCTGAATGAGAATACAGAATCTCGCACAATTAAACTTGGACTTCATCTGTCTGAATGTTGTACTGACATGGAGATCATATCATTAACTTCAACTGAGCAAAGCAAGCATAAACAAGATTATTTTATTTTGCTTGGGAAGTCAGGCCATCTATATTTGTATGACGATAGTTTGATTGAGAAGTATCTGCTACAATGCCAATCTAAGTCCACACCTTCACTTCCAAGGGAAGTAATTGTGAAGTTACCGCTGCCAGAAGCAAGCATCACAACTGCAAAATTCCTCTCCAACAATTCTAATATGTTAAATTCTGAAGATGAGCTGTTCAAAAACTATCCATTATTTGTTCCTGTTGAAACAAATCAGAAGGATGGAATCATCCTAAGTTCGGCCAAATTTACTGGGTTTTCCAAAGTTCAAAACTTGTACATAACTGGACACAGCAATGGAGCCATAACCTTCTGGGATGCTTCATGCCCCATTTTCACTCCGATTTTGCAATTGAAGCAACAGAGTGAAAATGACTGTTCATTAAGTGGTATACCGTTGACAGCATTATACTTTGATATCAATTCTCCAGTTCTTGCTTCTGGTGACCAAAGTGGAATGATTTGCATCTTTAGATTCAAACCTGAACCATATGCCACCAACAGCTTCATGTCTCTTACTGGGGGTACAAAGAAAGGGAATGAACATATAATCCAGAGTGTGAAACATGTAAAGAGTACTGGTGCCATTTTATCAATGAACATAGATCCCAGTTCAATGTATCTTGCTGTTGGTTCTGATCAAGGACATGTTTCAGTTTTTAACCTAGATGGGCCAACTTTGTTATACCAGAAACATATTGCTAGTGAAATTTCTCCTGGTATCATCTCTCTGCAGTTCCTAACCTGCAGTTTACAAGGTTTTGGAAAAAACATTTTAGCAGTTGGAACAAAAGATTCATCTGTTATGGCACTAGATAAAGAAAATGGAAACACACTAGGCACAGGAACTATTTCTCCTAAGAAGCCCTCTAAAGCTCTATTTATGAAGGTTTTGGATGGACAAGGTGAACAGCTCACAAGATCAATTACAAAAGATGGATTAGACTTGAGTGAAAGGAACCACATTGACGATGCAACAACGAAGCAGCAGTACATTCTGCTTTGTTCTGAGAAAGCTTTATATGTCTATTCATTGGTGCATGCGATTCAGGGAGTTAAAAAGGTGCTATACAAGAAAAAGTTTCATTCCTCTTCATGTTGCTGGGCATCCACATTTTACAGTCATTCTGATGTTGGCCTTGTACTTATTTTCACTAGTGGAAAAGTAGAATTAAGGTCTTTGCCAGAGTTATCCCTGGTTGTGGAGACTTCAATTAGAGGTTTCAGTTACTCTCCTCCAAAATCAAAGCCATTTTCTGAGAGCCAGATATGTTGTTCATCCAAAGGAGATCTTGTTTTGGTGAATGGTGACCAGGAAATTTTTGTTGTCTCATTGTTGGTCCAAAGGAACATTTTCAGGCTTTTGGACTCTATTAGCTGCATCTACAGGAAAGGAATGATGCTTTCACAAGAAGAGCTTGTCCCTAGCCCAGTCATAAATAAGGAAAAGAAAAGGGGTATATTCAGCTCTGTCATCAAAGATTTTACTGGCAGTAAAGAAAAGCATGCTCCCATCTTGGAAACAGAAGATTCTAAAGAAAGTATCCAGAAACTCTCAGCTATCTTTTCAACTGAAAATTTTCCATGTGATGCTGATAATAATGATAATCTGACTGTTGATGAAGAGCTTGAATTAAGTATAGATGACATTGACCTAGATGATCATGAAGAAAAACGAAAAGATCAAGGTATAATGGGAGGTTTTAACAAGAAGAAATTGCCTGGAAAGTTTGAGGCTCTAAAAGGAAGGTTAAAAGAGATGAGGGGCAAAATCCAGAAAACATCGGGTAAAGAAGAACAAGATGAGCAAGCTGGTGCAGTCGATCAAATTAAGAAGAAATATGGGTTTTCGTATTCCAATGAAACAAGCGTAGCTAAATTGGCACAAAGCAAGTTGCAGGAGAACATGAAAAAGTTGCAGGGAATCAATCTCAGAACAACAGAAATGCAAGATGAAGCAAAATCATTTTCATTATTGGCAAACCATGTCCTGCGGACGGCTGAACAGGATAGACAAAATTAA 3153 0.386 MFVKKLVEKASIKKTGGNSSDGLKASDVDPRLVFHHGVPSGGTNFAYDTIQRILALSTKDGQIKLYGKDNAQAMLESSEAQPSKFLQFIQNQGVLINVTSNDHIEVWDIDKKSLSDVYIAKEEITCFVVIQHSLYMYIGHSNGDISVLMLDQEPSWRLVKMKYVIPVSASYGNSEVSDDTAVTHVLPQPVAESKRVLIIFRNGQMILWDVQESRSILRTGGNKLQPLHNETKKVTSACWVCPFGSKVAVGYNNGELFIWRIPPLNIGNGSASECSNQNTPFLKLNLGYKSDKISIGSIKWVYAGGKASRLYVMGASDYATSNLLQVVLLNENTESRTIKLGLHLSECCTDMEIISLTSTEQSKHKQDYFILLGKSGHLYLYDDSLIEKYLLQCQSKSTPSLPREVIVKLPLPEASITTAKFLSNNSNMLNSEDELFKNYPLFVPVETNQKDGIILSSAKFTGFSKVQNLYITGHSNGAITFWDASCPIFTPILQLKQQSENDCSLSGIPLTALYFDINSPVLASGDQSGMICIFRFKPEPYATNSFMSLTGGTKKGNEHIIQSVKHVKSTGAILSMNIDPSSMYLAVGSDQGHVSVFNLDGPTLLYQKHIASEISPGIISLQFLTCSLQGFGKNILAVGTKDSSVMALDKENGNTLGTGTISPKKPSKALFMKVLDGQGEQLTRSITKDGLDLSERNHIDDATTKQQYILLCSEKALYVYSLVHAIQGVKKVLYKKKFHSSSCCWASTFYSHSDVGLVLIFTSGKVELRSLPELSLVVETSIRGFSYSPPKSKPFSESQICCSSKGDLVLVNGDQEIFVVSLLVQRNIFRLLDSISCIYRKGMMLSQEELVPSPVINKEKKRGIFSSVIKDFTGSKEKHAPILETEDSKESIQKLSAIFSTENFPCDADNNDNLTVDEELELSIDDIDLDDHEEKRKDQGIMGGFNKKKLPGKFEALKGRLKEMRGKIQKTSGKEEQDEQAGAVDQIKKKYGFSYSNETSVAKLAQSKLQENMKKLQGINLRTTEMQDEAKSFSLLANHVLRTAEQDRQN 1050
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00328 1050 CDD R-SNARE_STXBP5_6 986 1038 - -
Phco8g00328 1050 SMART WD40_4 402 483 IPR001680 GO:0005515
Phco8g00328 1050 SMART WD40_4 498 535 IPR001680 GO:0005515
Phco8g00328 1050 SMART WD40_4 220 260 IPR001680 GO:0005515
Phco8g00328 1050 SMART WD40_4 557 598 IPR001680 GO:0005515
Phco8g00328 1050 Pfam Lethal giant larvae(Lgl) like, C-terminal 712 828 IPR013905 -
Phco8g00328 1050 Gene3D - 42 317 IPR015943 GO:0005515
Phco8g00328 1050 PANTHER LETHAL 2 GIANT LARVAE PROTEIN 5 1042 - -
Phco8g00328 1050 Gene3D - 342 681 IPR015943 GO:0005515
Phco8g00328 1050 SUPERFAMILY WD40 repeat-like 46 657 IPR036322 GO:0005515
Phco8g00328 1050 FunFam Syntaxin-binding protein 5 isoform A 23 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00328 Phco-Chr8 3040160 3050514 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g00328 8 3040160 3050514 Phco8g00328 8 3040160 3050514 ECH
Phco4g00762 4 5879178 5889059 Phco8g00328 8 3040160 3050514 PCT