Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00762 ATGTTCGTGAAGAAACTCGTGGAGAAAGCATCCATAAAGAAGGCTGTTGGAAATTCAGTGGATGGGTTAAAAGCTAGTGATGTAGAACCACGTTTGGTATTTCATCAAGGGGTACCATCTGGTGGTACCAAGTTTGCCTATGATAATATTCAGAAGATACTTGCTCTTTCCACCAAGGATGGTCGGATTAAACTATTTGGAAAGGATAATGCCCAAGTCCTACTTGAATCTAGAGAGCCAGAGCCTAGCAAATTTTTACAGTTCATTCAGAACCAAGGCATCCTTATAAACGTATCTTTCAATAATCATATTGAGGTTTGGGACATAGACAAGAAACTGCTCATTGATGTGTTCATTGTTAAAGAAGAAATCACCTGTTTTTCGGTTCTTCAACATAGCCTCTTCATGTACATTGGATTTTCTAATGGTAATATTGCAGTTTTGAGTCTTGATCAAGAACCATGGCATTTGGTAAGGATGAAATACTCCATACCCCTTTTAGCTTCCTATGGAAATTCAACAGAAGAATCTGATGATACTGTTGTCACACACGTACTGCCTCAACCAGCAGCCGAGAGTCAGAGAGTTCTCATAATCTTTAGAAATGGCCAAATAGTATTATGGGATATTCAAGAAAGCAGGTCCATATTTAGAACTGGAGGAAGAATGTTACAAGCACGGTATAATGAAACAAAGATAGTGTCTTCTGCATGTTGGGTATGTCCATTCGGAAGTAAGGTGGTTGTAGGGTACAACAATGGAGAGCTCTTCATTTGGAGCATCCCTTCTCTAAACACAGGAAATAGTTTAGCAGCTGATAATAGTAGTCAAAACACTCCAATGTTCAAGTTTAACTTAGGATATAAATCTGACAAAACTTCCATAAGATCAGTAAAATGGATTTATGCTGAAGGAAGGGCCAGTCGACTATACGTTATGGGAGGTTCTGGTCATGCTCCTTCAAACTTCTTGCAGGTAGTGCTGTTGAATGAGAATACGGAATCTCGCACGATTAAGATGGGACTTCATTTGTCAGAAGGGTCTATTGACATGGAGATCATATCAACCTCAAGCAAGCAGAGACAAAATTATTTCATTTTGCTTGGGAAATCAGGGAATGTATATCTATATGATGATAATTTGATTGAAAGATATCTATTGCAAAGCCAGTCTAAGTCCACTCCTTCACTGCCAAAGAAAGTGGTTGTGAAGTTACCACTGGCAGATTCAAGCATCACTACAGCAAAATTCATCTCCAAAAATCCCAATGTGTTTAGTTCTGAAGACGAGTATTACAGCCAGCTGGTCAAGAATTATCCACCGCTTATTCCCATTGAAACAAATCTCAAAGATGGGATTAACTTCAGTTCTGCCAATTTCACCGGATTTTCGAACTTTAGAAACTTGTACATAACTGGACACAGTAATGGAGCCATAACTTTTTGGGATGCGTCATGTCCCTTTTTCACCCCAATTTTGCAGTTAAAGCAACAGGCTGAAAATGATGTTTCTTTAAGTGGTGTACCCTTGACGGAATTATATTTTGATAACAAATCTTCACTCCTTGTTTCTGGTGACCAAAGTGGGATGGTTCGTATCTACAAATTCAAACCTGAACCTTATGCATCCAACAACTTCATGTCTCTTACTGGAGGTACAAAGAAAGGGACTGACCATGTAATCCACAGTATGAAACTCGTAAAAACTAGTGGTGCTGTAATTTGCATGAACATAGATCATAACTCAAGGCATCTTGCTGTTGGTTCTGACCAAGGAAACGTTTCAGTCATTAACATAGATGATCCATCTTTGTTATTCCGGAAAAATATTGCAAGTGAAATTTCCTCCAGTATCGTCTCTTTGCAGTTTAAAACCTGCAGTTTGCATGGTTTTGAGAAAAACATTTTAATAGTTGTAACAAAGGACTCATCTGTTCTAGCACTAGATGGTGAAACTGGAAACTCATTCAACACTGGAGCTATTCACCCTAAGAAGCCCTCTAAAGCCATATATATGCAAGTGTTGGATGGACTAGGAGAACCAGTCACAGGATCGGTTACAAAAGATGGTTTAGATTCGAGAGAAGGGAATCGTACTGAAGATGCAACAGCAAAGCAATTGTACATTTTGCTCTGTTCTGAGAAGGCTTTGTATGTATATTCTTTTGTGCATGCTGTACAGGGAGTTAAAAAGGTGCTTTACAAGAAGAAATTTTGTTCCTCTTCCTGTTGCTGGGCATCGACAATTTACAGCCTCTCTGATATCAGTCTTGTTCTCCTTTTCAACAGTGGGAAAGTGGAATTAAGGTCTTTGCCAGCGTTATCTCTGATAGTGGAGACTTCAATTAGAGGTTTCAATTATTCACCTCCAAAATTGAAGTCATATTGTGATAGCCAGATATGTTGTTCACCCAAAGGAGATATTGTTTTGGTGAATGGTAATCAGGAAATTTTTGTTGTCTCATTGTTGGCCCAGAGGAATATTTTCAGGCTTTTGGATTCTGTTAGCTGCATCTACAGGAAGGAAAGAATGCCATCACAAGACGAGCTTGTTCCTGGCCCTGTCATCGATAAGGAAAAGAAAAAGGGTATACTCAGCTCAGTTATAAAAGATTTTACAAGTAGTAAAGAAAAGCATGGGACCCTCATGGGAAAAGAAGATCCCAAAGAAAACATACGGGAACTCTCAGCAGTATTCTCAAATACGAACTTTGCATGTAATGATAGTGATGATAAACCAACAGTGGATGAAAGTAAGCTTGAATTAAACATAGATGACATTGACCTAGAGGATCATGGAGAAAAACGCAAAGAACAAAGCATATTAGGATCTCTTAATAAGAAGAATTTGGTTGGAAAATTTCAGTCTCTGAAAGGAAGATTGAAAGAAATGAAGGGAAACTACCAGAAGGCATCAGATAAGGAAGGGCAGCAGGAGGAAAAAGATGGTGCGCTTGATCAAATTAAGAAGAAATATGGATTTTCTTCTTCCTCAAATGAAACAACCGCTGCTAAACAGGCACAAATCAAGCTGCATGAAAACACATGGAAATTACAGGGTACCAATCTTCGTGCCAGAGAGATGCAAGATACAGCAAAATCATTTTCATCATTGGCAAAACAAGTGCTCCGAACTGCTGAGCATGATAGACGAAGTTGA 3159 0.3881 MFVKKLVEKASIKKAVGNSVDGLKASDVEPRLVFHQGVPSGGTKFAYDNIQKILALSTKDGRIKLFGKDNAQVLLESREPEPSKFLQFIQNQGILINVSFNNHIEVWDIDKKLLIDVFIVKEEITCFSVLQHSLFMYIGFSNGNIAVLSLDQEPWHLVRMKYSIPLLASYGNSTEESDDTVVTHVLPQPAAESQRVLIIFRNGQIVLWDIQESRSIFRTGGRMLQARYNETKIVSSACWVCPFGSKVVVGYNNGELFIWSIPSLNTGNSLAADNSSQNTPMFKFNLGYKSDKTSIRSVKWIYAEGRASRLYVMGGSGHAPSNFLQVVLLNENTESRTIKMGLHLSEGSIDMEIISTSSKQRQNYFILLGKSGNVYLYDDNLIERYLLQSQSKSTPSLPKKVVVKLPLADSSITTAKFISKNPNVFSSEDEYYSQLVKNYPPLIPIETNLKDGINFSSANFTGFSNFRNLYITGHSNGAITFWDASCPFFTPILQLKQQAENDVSLSGVPLTELYFDNKSSLLVSGDQSGMVRIYKFKPEPYASNNFMSLTGGTKKGTDHVIHSMKLVKTSGAVICMNIDHNSRHLAVGSDQGNVSVINIDDPSLLFRKNIASEISSSIVSLQFKTCSLHGFEKNILIVVTKDSSVLALDGETGNSFNTGAIHPKKPSKAIYMQVLDGLGEPVTGSVTKDGLDSREGNRTEDATAKQLYILLCSEKALYVYSFVHAVQGVKKVLYKKKFCSSSCCWASTIYSLSDISLVLLFNSGKVELRSLPALSLIVETSIRGFNYSPPKLKSYCDSQICCSPKGDIVLVNGNQEIFVVSLLAQRNIFRLLDSVSCIYRKERMPSQDELVPGPVIDKEKKKGILSSVIKDFTSSKEKHGTLMGKEDPKENIRELSAVFSNTNFACNDSDDKPTVDESKLELNIDDIDLEDHGEKRKEQSILGSLNKKNLVGKFQSLKGRLKEMKGNYQKASDKEGQQEEKDGALDQIKKKYGFSSSSNETTAAKQAQIKLHENTWKLQGTNLRAREMQDTAKSFSSLAKQVLRTAEHDRRS 1052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00762 1052 PANTHER LETHAL 2 GIANT LARVAE PROTEIN 9 1045 - -
Phco4g00762 1052 Pfam Lethal giant larvae(Lgl) like, C-terminal 727 835 IPR013905 -
Phco4g00762 1052 SMART WD40_4 111 149 IPR001680 GO:0005515
Phco4g00762 1052 SMART WD40_4 496 535 IPR001680 GO:0005515
Phco4g00762 1052 SMART WD40_4 398 483 IPR001680 GO:0005515
Phco4g00762 1052 SMART WD40_4 221 260 IPR001680 GO:0005515
Phco4g00762 1052 SMART WD40_4 557 598 IPR001680 GO:0005515
Phco4g00762 1052 Gene3D - 26 274 IPR015943 GO:0005515
Phco4g00762 1052 SUPERFAMILY Nucleoporin domain 181 379 - -
Phco4g00762 1052 SUPERFAMILY WD40 repeat-like 568 824 IPR036322 GO:0005515
Phco4g00762 1052 Coils Coil 954 981 - -
Phco4g00762 1052 CDD R-SNARE_STXBP5_6 987 1044 - -
Phco4g00762 1052 SUPERFAMILY WD40 repeat-like 85 646 IPR036322 GO:0005515
Phco4g00762 1052 FunFam Syntaxin-binding protein 5 isoform A 23 182 - -
Phco4g00762 1052 Gene3D - 342 674 IPR015943 GO:0005515
Phco4g00762 1052 FunFam Syntaxin-binding protein 5 isoform A 185 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00762 Phco-Chr4 5879178 5889059 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00762 4 5879178 5889059 Phco4g00762 4 5879178 5889059 ECH
Phco4g00762 4 5879178 5889059 Phco8g00328 8 3040160 3050514 PCT