Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00319 ATGATTCGAGTTGAGCTTGTGGTGTTGATGGTTCTCTTCGAAGGGTTATTTTCAGCTGGAGCTGTATCAGATAATTCCACAATACCTGCTTTGGTAAACATTGGAGTTCTCTATTCTTTCAATACCAGTGTTGGTAAAATGGTGAAAACTGCTGTAGAAGCGGCGGTTGAAGATGTAAATTCTGATCCATCTATTCTTGCTCAAACTACGTTGAAGCTCTCAATGCAAGAAGATACCAAATACAGAGGATTTTTGAGCATTGCTGAGGCCTTGCAGCTCATGGCGACACAAACTGTGGCTATAATTGGCCCCCAGACCTCTACAACAGCTCATGTCATATCTCATATAGCAAATGAGCTCCAAGTTCCTCTGCTATCATTTACAGCCACTGACCCTACCCTTTCTTCTCTTCAATTCCCATTCTTTATTAGAACTGCTTTTAGTGACATTTATGAAATGACTGCAATAGCAGACCTTGTTAACTACTTTGAATGGAGAGAGGTTATTGCAGTTTATGGCGACGATGACCATGGGAGGAATGGAATGGGTGCATTAGGGGATAAGTTAGCCGAGAGGCGTTGCAAGATTTCATTTAAAGCACCTATGACTCCTGAGGCAACTAGAGAAGAGATTACTGATGTACTTGTTCAGGTGGCCCTGGCAGAATCCCGGGTTATAGTTCTTCACACAAGTACTGCTTGGGGGCCAAAAGTGTTAAGTGTGGCAAAGTCTCTGGGGATGATGGAAAATGGGTATGTCTGGATAACAACTACTTTTCTCTCTACATGGCTGGATATAAATAGCCCCCTATCTTCAGATGCAACGGATGACATGCAAGGGGTCATTACACTTCGTATGTATGTACCAGATTCAAAGCTCAAAAGATGGTTTGTTTCTAGGTGGACAAACTTGACTACTACTGGAAATACTGGTAATGGTACCCTTGGTTTGAGTACTTATGGTATCTTTGCATATGATACTGTGTTTGCTCTTGCTCATGCACTTGATGCATTTTTCAAACGAGGGAATCAAATTACATTTTCACATGATCCAAAGCTATCTCAAATACGTGGAGACAACATGCATCTTGATGCCGTGAAAATCTTCAACGAAGGAAATCTGTTGCGTAAACATATCTATGAGGTTAATATGACTGGAGTATCAGGCCTATTCAAGTATGCATCTGATGGAAACCTTGTTAATCCAGCTTATGAAATCATCAATGTGATTGGAACAGGAACCCGGAGGATTGGTTATTGGTCTAATTACACTGGATTATCAATTGTTCCTCCAGAAGAACTTTATTCAAAACCACCTAATCGATCCAGTGCAAGCCAAAAGCTACTCCCAGTGTTTTGGCCAGGAGAAACAACCCAAAGGCCCCGTGGTTGGGTTTTTCCAAACAGTGGAAGGATGTTAAGAATTGGAGTGCCAAAAAGGGTTAGTTACCGGGATTTTGTCTCTCAAGTACAAGGCACTGACATGTTCAAGGGATTCTGCATTGATGTATTTCTTTCTGCAGTGAACCTTTTGCCCTATGCTGTCCCCTATAAATTTGTTTCATATGGAGACGGTGACAACAATCCTAGTAACACTGAACTTGTCCGTCTTATCACAGCGGATGTTTTTGATGCTGCAGTAGGTGACATTACAATTACAACAGAAAGAACAAAGATGGTGGATTTTACTCAGCCATATATTGAGTCTGGTCTGGTGGTAGTAGCCTCGGTTAAGAAGACGGATTCCAATGCTTGGGCATTTCTTAAACCATTTACGCCAATGATGTGGACTGTCACAGCTATCTTTTTTCTATTAGTGGGAGCTGTTGTTTGGATTTTAGAGCATAGGCTGAATGATGATTTTAGGGGAACTCCCAAACAACAAATAGTCACAATTTTGTGGTTTAGTTTTTCAACCATGTTCTTTGCTCACAGGGAAAATACAGTGAGCACTCTTGGTCGCTTTGTGCTGCTTATATGGTTATTTGTAGTTCTAATAATTAACTCAAGTTACACAGCTAGCCTGACATCAATCCTCACAGTGCAACAACTTTCTTCACCTGTTAAAGGCATTGACTCTTTAATAAATAGCAAAGAGCCTATTGGCTACTTGCAGGGTTCATTTACTCGAACTTATTTGATTGAGGAAATCGGTATTGCTGAATCCAGACTGGTTCCTCTAAAAACACCGGAAGAAACTGCAAAAGCACTAAAAAATGGTCCCCAGAAGGGTGGTGTTGCTGCATATGTTGATGAGCGTGCTTACATAGAACTTTTCCTTTCTAGCCGGTGCGATTTTAGCATTGTAGGTCAAGAGTTCACCCGAAATGGTTGGGGATTTGCTTTTCCACGGGACTCACCATTAGCAGTGGATCTTTCAACTGCCATATTGGAGTTGGCTGAGAATGGAGACTTACAAAGGATCCATGACAAATGGCTTTTGAGCAGTGCCTGCTTATCACAGGGTGCAAAGCTTGAAGTGGACAGACTCAAGCTGAGAAGCTTCTGGGGCCTCTATCTGGTGTGTGGATTGGCATGTGTGCTTGCTCTCCTCATATATCTTGTTCAGACCATGAGACAGTACTCCAAGCACGGCCGGGAGGAACTCGAGTCTTCTGGCCATGGCTCAGGTTCTTCACGTCTGCGCACATTCCTTTCATTTGTAGATGAAAAGGAAGAGATTGTCAAGAGCCGTGTGAAGAGAAAGAAAATAGAGGGCATGTCCTACAGAAGCACAAGTGAGGTAGGATCATCCATCATCTCCAACAAAGATTATTCTCAGGCATCATCAAACAGAATTGATTCAGCTACTGAAATCTAA 2820 0.4209 MIRVELVVLMVLFEGLFSAGAVSDNSTIPALVNIGVLYSFNTSVGKMVKTAVEAAVEDVNSDPSILAQTTLKLSMQEDTKYRGFLSIAEALQLMATQTVAIIGPQTSTTAHVISHIANELQVPLLSFTATDPTLSSLQFPFFIRTAFSDIYEMTAIADLVNYFEWREVIAVYGDDDHGRNGMGALGDKLAERRCKISFKAPMTPEATREEITDVLVQVALAESRVIVLHTSTAWGPKVLSVAKSLGMMENGYVWITTTFLSTWLDINSPLSSDATDDMQGVITLRMYVPDSKLKRWFVSRWTNLTTTGNTGNGTLGLSTYGIFAYDTVFALAHALDAFFKRGNQITFSHDPKLSQIRGDNMHLDAVKIFNEGNLLRKHIYEVNMTGVSGLFKYASDGNLVNPAYEIINVIGTGTRRIGYWSNYTGLSIVPPEELYSKPPNRSSASQKLLPVFWPGETTQRPRGWVFPNSGRMLRIGVPKRVSYRDFVSQVQGTDMFKGFCIDVFLSAVNLLPYAVPYKFVSYGDGDNNPSNTELVRLITADVFDAAVGDITITTERTKMVDFTQPYIESGLVVVASVKKTDSNAWAFLKPFTPMMWTVTAIFFLLVGAVVWILEHRLNDDFRGTPKQQIVTILWFSFSTMFFAHRENTVSTLGRFVLLIWLFVVLIINSSYTASLTSILTVQQLSSPVKGIDSLINSKEPIGYLQGSFTRTYLIEEIGIAESRLVPLKTPEETAKALKNGPQKGGVAAYVDERAYIELFLSSRCDFSIVGQEFTRNGWGFAFPRDSPLAVDLSTAILELAENGDLQRIHDKWLLSSACLSQGAKLEVDRLKLRSFWGLYLVCGLACVLALLIYLVQTMRQYSKHGREELESSGHGSGSSRLRTFLSFVDEKEEIVKSRVKRKKIEGMSYRSTSEVGSSIISNKDYSQASSNRIDSATEI 939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00319 939 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 324 336 - -
Phco8g00319 939 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 45 61 - -
Phco8g00319 939 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 106 134 - -
Phco8g00319 939 Gene3D - 584 712 - -
Phco8g00319 939 FunFam Glutamate receptor 584 714 - -
Phco8g00319 939 Pfam Bacterial extracellular solute-binding proteins, family 3 530 813 IPR001638 -
Phco8g00319 939 Gene3D - 148 426 - -
Phco8g00319 939 FunFam Glutamate receptor 468 584 - -
Phco8g00319 939 CDD GluR_Plant 471 813 - -
Phco8g00319 939 PIRSF IGluLR_plant 1 938 IPR017103 -
Phco8g00319 939 Gene3D - 50 401 - -
Phco8g00319 939 SUPERFAMILY Periplasmic binding protein-like I 29 465 IPR028082 -
Phco8g00319 939 Gene3D - 755 820 - -
Phco8g00319 939 Gene3D - 471 583 - -
Phco8g00319 939 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 32 888 IPR015683 -
Phco8g00319 939 FunFam Glutamate receptor 148 307 - -
Phco8g00319 939 Pfam Receptor family ligand binding region 48 411 IPR001828 -
Phco8g00319 939 CDD PBP1_GABAb_receptor_plant 33 430 IPR044440 -
Phco8g00319 939 FunFam Glutamate receptor 710 817 - -
Phco8g00319 939 SMART GluR_14 474 815 IPR001320 GO:0015276|GO:0016020
Phco8g00319 939 Pfam Ligand-gated ion channel 814 846 IPR001320 GO:0015276|GO:0016020
Phco8g00319 939 SUPERFAMILY Periplasmic binding protein-like II 448 815 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00319 Phco-Chr8 2969290 2973280 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g00319 8 2969290 2973280 Phco8g00319 8 2969290 2973280 ECH
Phco8g00319 8 2969290 2973280 Phco4g00753 4 5812047 5816679 ECH
Phco4g00753 4 5812047 5816679 Phco8g00319 8 2969290 2973280 PCT