Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00753 ATGTGCAAGTATTGGCCACTGGTTAAAGTTTATCTTTTTGGTCTACTATGTATAGGTGCCACCTCCCTTTTTGTGAAGCTACCAGGCATAGCAGGTTGTTCATTAGTGGCTATTGTTTTACAGGCCCCTTATCCAACCATGATTAAAGTTTGGCCCTTTGTTTTCATTGTTCTCTCCATTGGATGCTTTTCAAATGGGCGTGGCAGGCAAAATTCCACAGTACCAGATTTTGTAAATATTGGGGCTCTCTTCTCCTTCAATACCAGTGTTGGTAGAACTATAAAAGTTGCATTAGAAGCTGCGTTTGAGGATATAAATTCTGATCCAACTATTCTTGGTAGAACCAAGCTAAACCTCTCACTGCAAGAAGATTCTAAGTACAGAGGTTTCCTGAGCATTGCCGAGGTTTTGCAGGTCATGGCAAGACAGACGGTGGCGATAATAGGCCCCCATAGTTCTGTAACAGCTCATGTCATAAGTCATATTGCAAATGAGCTCCAAGTTCCTCTTTTGTCATTTTCAGCTTTCGACCCTACTCTTTCTTCACTTCAATTCCCATTCTTCATTAGAACTTGCCATAGTGATATTTTTCAAATGACTGCAATAGCAGACCTTATTGACTACTATGGCTGGAAAGATGTTATCGCTGTCTACCCTGATGATGATAATGGGAGAAATGGAATTGGCGCATTAGGTGATAAGCTTGCGGAGAGGCGTTGCAAGATATCATATAAAGCAGCTTTGAGTCCCCAAGCATCTATGGAAGAGATAACTAATGTGCTTGTCCAGGTGGCTCTGGCAGAATCACGGGTAATAGTTGTTCATGGCAATACTCAACTTGGCCCCCAGGTGTTTACAGTTGCGAAGAATCTAGGGATGATGGGAACTGGTTATGTCTGGATAGCCACTGCTTTCCTCTCTGCTCTGCTTGATATCAACTATCCCCTCCCTCCCGATTCAATGGATGAAATTCAAGGAGTTCTTACACCACGTATCTACACGCCAGATTCACAGCGCAGAAGAAGTTTTGTTTCTAAGTGGAAAAACCTAACTAGTGGAAATACTGCCAATGTCAAACTTGGATTGAGTTTCTTACCTCTCTTTGCATATGACACTGTTTATGTGCTTGCTCGTGCTCTTGATGCATTTTTCAAAGAAGGTAACCAAATTACATTCTCAACTGATTCAAAGCTATCTAGCATACATGGAAACAACTTGAATCTTGAGGCCTTGAAAGTCTTTAATGAAGGAAATCTGTTACGTAGTAACATCTATGAGGTAAACATGGTTGGTGTATCAGGTCCATTCAAGTTTTCATCTGATAGAAACCTTGCTAATCCTGCATATGAAATCATTAATGTGATTGGAACAGGAACTCGGAGGATTGGTTATTGGTCTAATTACTCTGGTTTATCAGTTGTTCCTCCAGAAACTCTTTATTCCAAACCAGTCAATCTTGCCAGGAAAAATCAAAAGCTGTTTCCTGTGATTTGGCCTGGAAACACAGATGAGAGACCTCGTGGTTGGGTTTTTCCAAACAATGGAAGGCTCTTAAAGATTGGAGTACCAAGAGGTGTTAGTTACCAAGAATTTGTCTCACAGATAAAAGGCACCGATATGTTTGAGGGTTTCTGCATTGACGTATTTGTTGCTGCGGTGAACCTGTTGCCTTATGCTGTCCCCTACAGGTTCATCTCATACGGGGATGGTAAGAACAATCCTAGTATGACTGAGCTTGTCCGTCTGATCACAACGGGTGAATTTGATGGTGCGGTAGGTGACATTGCAATTACTACAGAAAGAACAAGGATGGTGGATTTTACTCAGCCATATATTGAGTCTGGTCTAGTGGTAGTAGCACCCGTTGGGAAGACAGAATCTCATGCTTTGGCCTTTTTGGCCCCTTTTACACCAAAGATGTGGTGTGTCACAGCTGTCTTTTTCATATTAGTGGGAGCTGTTGTTTGGATTTTGGAGCATAGGGTGAATGATGAATTTAGGGGACCACCCAAAAAACAAGTAGTTACCGTTTTATGGTTTAGCTTTTCAACAATGTTCTTTTCCCACAGGGAAAATACAGTGAGCACACTTGGTCGTGCCGTGTTGATTATATGGTTATTTGTAGTTCTTATAATTAACTCAAGTTATACGGCAAGTCTAACCTCAATCCTCACAGTGCAACAACTTTATTATTCCATTAAAGGCATTGAAAGTCTAGTAAATAGCAAAGAACCTATCGGCTACACGCAGGGTTCTTTTGCAAAAAACTATTTAGTTCAGGAAATTCATATTGAGGAGTCCAGGCTAGTTCCTCTGACAACACCAGAAGACATTGCTAGAGCACTGAAAAATGGCCCCAAAAATGGGGGTGTTGCTGCTTACATTGATGAGCATGCCTACACTGACATCTTCCTCTCTAGCCGTTGTGATTTTACTGTCGTAGGTCAGGAGTTCACGAGAAATGGTTGGGGATTTGCCTTTCCACGGGACTCGCCATTAGCAGTTGACCTGTCAACTGCCATATTGCAAATGATAGATAATGGAGATTTGCAAAGGATCCATGACAAATGGCTTTTGAGTAGTGCTTGCTTATCACAAGGTTCAAAGCTTGAAGTGGAAAGACTCCAACTTAAAAGCTTTTGGGGCCTCTATGCGATCTGTGGACTTGCCTGCTTGCTTGCACTCTTCATGTACCTCATACAGATTTTGAAGCAATACCACAAGCACTACTCAAATGAACCTGAGTCCCCTGACGGCCAAAATTTAGGATCATCAAGATCTTCACGTCTTAAAACTTTCCTTTCATTTGCAGATGAGAAAGAAGAGACTGTTAAGAGCAGGTCCAAGAGAAGGAAAATGGAGAGGATATCATACAGAACCACTGAAGGAAACTCATCCATCGACTCGAATAAGGGATATGCTTCACGCAGAAGTGAATATGCTAGTGAAGTATTATGA 2958 0.4165 MCKYWPLVKVYLFGLLCIGATSLFVKLPGIAGCSLVAIVLQAPYPTMIKVWPFVFIVLSIGCFSNGRGRQNSTVPDFVNIGALFSFNTSVGRTIKVALEAAFEDINSDPTILGRTKLNLSLQEDSKYRGFLSIAEVLQVMARQTVAIIGPHSSVTAHVISHIANELQVPLLSFSAFDPTLSSLQFPFFIRTCHSDIFQMTAIADLIDYYGWKDVIAVYPDDDNGRNGIGALGDKLAERRCKISYKAALSPQASMEEITNVLVQVALAESRVIVVHGNTQLGPQVFTVAKNLGMMGTGYVWIATAFLSALLDINYPLPPDSMDEIQGVLTPRIYTPDSQRRRSFVSKWKNLTSGNTANVKLGLSFLPLFAYDTVYVLARALDAFFKEGNQITFSTDSKLSSIHGNNLNLEALKVFNEGNLLRSNIYEVNMVGVSGPFKFSSDRNLANPAYEIINVIGTGTRRIGYWSNYSGLSVVPPETLYSKPVNLARKNQKLFPVIWPGNTDERPRGWVFPNNGRLLKIGVPRGVSYQEFVSQIKGTDMFEGFCIDVFVAAVNLLPYAVPYRFISYGDGKNNPSMTELVRLITTGEFDGAVGDIAITTERTRMVDFTQPYIESGLVVVAPVGKTESHALAFLAPFTPKMWCVTAVFFILVGAVVWILEHRVNDEFRGPPKKQVVTVLWFSFSTMFFSHRENTVSTLGRAVLIIWLFVVLIINSSYTASLTSILTVQQLYYSIKGIESLVNSKEPIGYTQGSFAKNYLVQEIHIEESRLVPLTTPEDIARALKNGPKNGGVAAYIDEHAYTDIFLSSRCDFTVVGQEFTRNGWGFAFPRDSPLAVDLSTAILQMIDNGDLQRIHDKWLLSSACLSQGSKLEVERLQLKSFWGLYAICGLACLLALFMYLIQILKQYHKHYSNEPESPDGQNLGSSRSSRLKTFLSFADEKEETVKSRSKRRKMERISYRTTEGNSSIDSNKGYASRRSEYASEVL 985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00753 985 Pfam Bacterial extracellular solute-binding proteins, family 3 573 858 IPR001638 -
Phco4g00753 985 SUPERFAMILY Periplasmic binding protein-like I 74 510 IPR028082 -
Phco4g00753 985 FunFam Glutamate receptor 755 862 - -
Phco4g00753 985 Pfam Receptor family ligand binding region 96 456 IPR001828 -
Phco4g00753 985 Gene3D - 629 758 - -
Phco4g00753 985 MobiDBLite consensus disorder prediction 959 976 - -
Phco4g00753 985 Gene3D - 512 628 - -
Phco4g00753 985 FunFam Glutamate receptor 513 629 - -
Phco4g00753 985 FunFam Glutamate receptor 629 759 - -
Phco4g00753 985 Gene3D - 804 865 - -
Phco4g00753 985 Gene3D - 96 446 - -
Phco4g00753 985 SMART GluR_14 519 860 IPR001320 GO:0015276|GO:0016020
Phco4g00753 985 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 78 932 IPR015683 -
Phco4g00753 985 SUPERFAMILY Periplasmic binding protein-like II 495 860 - -
Phco4g00753 985 PIRSF IGluLR_plant 46 983 IPR017103 -
Phco4g00753 985 MobiDBLite consensus disorder prediction 938 985 - -
Phco4g00753 985 CDD PBP1_GABAb_receptor_plant 79 475 IPR044440 -
Phco4g00753 985 CDD GluR_Plant 518 858 - -
Phco4g00753 985 Pfam Ligand-gated ion channel 859 891 IPR001320 GO:0015276|GO:0016020
Phco4g00753 985 FunFam Glutamate receptor 194 351 - -
Phco4g00753 985 Gene3D - 194 471 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00753 Phco-Chr4 5812047 5816679 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00753 4 5812047 5816679 Phco4g00753 4 5812047 5816679 ECH
Phco8g00319 8 2969290 2973280 Phco4g00753 4 5812047 5816679 ECH
Phco4g00753 4 5812047 5816679 Phco8g00319 8 2969290 2973280 PCT