Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00241 ATGGGTTCCAATGGTAGCAAAGCCACTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCGTCGGGGAGTTTAAGGAAGGGTCGATCTAAGGGCATTAGAGTTTTTCAATCTTATTGTCTTGGAACTACTTCTGGTTCTCACGACAGAGAGAGTGAAGACCAGGTTTGTGATCAGAATAAAGTGAATGGCAGTGATGTTACATATGCTAATGGCAATGTAACAAATTCCTATGAGGTGAAGACAGAGTCATTTAGAAAGGTTAAAGCTAGTGAAATGACTTGTATGCCTTCTAACATTGACCTTCATGAATGGGGAGAAACAAGCATCCCTAACACTTCATCCAGAACTGCTAGCAGCTCTATTCATAATTCTTCAACTCATTCCTTAAACCCCAGTCATTTCCTTTCTCAGCTTAGCCTCATTCCTGGTAGTGTAAGCTTCAGACTTAGCAGAACCACCAGTTTAGGGTCATCAAGGCCTTATCCTGTTTCTTCTGCAAGTCTCTCAATATTTGACAACGAAGATGAGTGTAATCTCCGTCCTAGATCTCCTGTAAATTCGATTGACAGAAGAGAAACACAACAATGCAATAACCTGCTTCGGACATCTTTTTTCAATCAAATACACACACAATCTTATGAAGATGCTTCTAATAATTTAAGGTCAAATGTCCCAACATCAGGTACACTAGTAAACTTGCAGAGAAATCCCACAGATGGAGTTCCCACAAGAGAAGGGCTGGATGTGAACTTATTTTCTCCAAGAATTCAAACAGAGACAGAAACTGTTGACACTAGACGTATTGATAGACGAAATGGTGCTCAAGAATCAGTCGAACAGAATGTTCCTTTTAGTGGAACTTTAAGTGTTGGAAGGCTTCATGATAGAGTTCTTGGTGGATCAACATTTCCTGACCTCACCTTTTGCCCTCTGCAACAGGAAAGAGAGCTGAGAAATGGTAGCCTCCATAGCCAGGATGTTGAGAGGCAATCGGTGGAGGGAGATTCAAGAGTGTTACCATCTGATCATACTACTATCAATTCTTCTACTTCTACCATGTCTAACTCCATGCTTGGTATCCAAGACAATGAGGTTGAGACTTCTCGATTGAGAGAAGGTAGGTATCAGGATCTACTGGAGCATAGGTCCAATTTCCTTGAACGGAGAAGAAGAATGCGGTCCCAGGTTCGTGCTCTTCAGCGGTTGGGTAGCCGGTTTGAAAATCTTTCTGGACATGATAGATCATGTATCTTGTCTGGTCAACATAGAGATGGTCATTGTACATGCCGAATCAACAATCCTAACACTAATTCAAATGATGATACCGGTGCTAGAGCTAGCATATCAAGAATTGTTATGCTTGCTGAAGCCTTATTTGAGGTTCTGGATGAAATTCACCAGCAATCTGTTGTTTTATCTTCCCGCCCATCTGTATCTTCTACTGGATCTGTTCCTGCACCTAATGATGTTGTTGATTCCTTGCCTGTCAAGTTATATCAGAAGTTGCACAAACATCAAGAGGATGGTGCTCAATGCTATATATGCCTTGTGGAGTATGAGGACGGAGACAACATGCGAGTACTACCATGCCATCACGAATTTCATAGAACATGTATAGACAAGTGGCTGAAGGAGATTCACAGGGTATGTCCACTTTGTAGAGGGGACATATGCATATCCGATTCAACACCAAGAGAGAACTGGAGTGGGTAG 1713 0.4174 MGSNGSKATSSSSSSSSSSSSGSLRKGRSKGIRVFQSYCLGTTSGSHDRESEDQVCDQNKVNGSDVTYANGNVTNSYEVKTESFRKVKASEMTCMPSNIDLHEWGETSIPNTSSRTASSSIHNSSTHSLNPSHFLSQLSLIPGSVSFRLSRTTSLGSSRPYPVSSASLSIFDNEDECNLRPRSPVNSIDRRETQQCNNLLRTSFFNQIHTQSYEDASNNLRSNVPTSGTLVNLQRNPTDGVPTREGLDVNLFSPRIQTETETVDTRRIDRRNGAQESVEQNVPFSGTLSVGRLHDRVLGGSTFPDLTFCPLQQERELRNGSLHSQDVERQSVEGDSRVLPSDHTTINSSTSTMSNSMLGIQDNEVETSRLREGRYQDLLEHRSNFLERRRRMRSQVRALQRLGSRFENLSGHDRSCILSGQHRDGHCTCRINNPNTNSNDDTGARASISRIVMLAEALFEVLDEIHQQSVVLSSRPSVSSTGSVPAPNDVVDSLPVKLYQKLHKHQEDGAQCYICLVEYEDGDNMRVLPCHHEFHRTCIDKWLKEIHRVCPLCRGDICISDSTPRENWSG 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00241 570 SMART ring_2 512 553 IPR001841 -
Phco8g00241 570 MobiDBLite consensus disorder prediction 319 355 - -
Phco8g00241 570 MobiDBLite consensus disorder prediction 1 29 - -
Phco8g00241 570 SUPERFAMILY RING/U-box 490 561 - -
Phco8g00241 570 MobiDBLite consensus disorder prediction 105 128 - -
Phco8g00241 570 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 474 558 IPR013083 -
Phco8g00241 570 MobiDBLite consensus disorder prediction 1 26 - -
Phco8g00241 570 ProSiteProfiles Zinc finger RING-type profile. 512 554 IPR001841 -
Phco8g00241 570 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 566 - -
Phco8g00241 570 MobiDBLite consensus disorder prediction 319 336 - -
Phco8g00241 570 FunFam Putative RING zinc finger domain superfamily protein 481 559 - -
Phco8g00241 570 MobiDBLite consensus disorder prediction 227 246 - -
Phco8g00241 570 MobiDBLite consensus disorder prediction 337 355 - -
Phco8g00241 570 Pfam Ring finger domain 511 554 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00241 Phco-Chr8 2273724 2277700 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g00241 8 2273724 2277700 Phco8g00241 8 2273724 2277700 ECH
Phco4g00685 4 5178404 5182469 Phco8g00241 8 2273724 2277700 PCT