Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00156 ATGGCCACTGTTGCCAACCCCAGAACTTGGATTCCGTATATGAACAGCAAAGACTGTTCTCAAGGATTTTGTAGCTTGTATTGTCCACAGTGGTGTTACATAGTGTATCCTCCTCCTCCACCTTTTGAGTACCCTGATGATGATTCAAGCCCAAACTTCTCCCCTCTTGTCATTGCAATCATTGGTATCATGGCCACTGCTTTTCTTCTGGTTAGTTACTACACTCTAATATCCAAGTACTGTGGCCCCAGAGAGTCTGCACGCAGAGACCCAAATGACGACTTGCAAGGCACTCACAATCCCTCTCTCCACGAACCATGGAACGCTTCAACCACCGGGCTTGACGAGGCTCTGATAAAATCCATTGCAATTTTCAAGTACAAGAAAGGGGATGGTGGTTCTGTTGGAGTCACGGATTGTTCAGTTTGTCTGAGCGAGTTTGAAGACGATGAAAGTGTTAGACTCTTGCCAAAGTGCAGCCACGTTTTCCATGCCCCTTGTATTGACACTTGGCTCAAGTCTCACTCTAGCTGCCCCCTGTGTCGTGCTGCCATATTCACTTTCAACAACGCTTCTGTTCCTCGGGCTCATACCCCAGAGGAAGAGGCTCCTTCTTTAAGGAATAATGAAACTTCTTCTGAGAATGAAAGTGTTGGAAGTGGCAATGAGTATGGAGTGGTGGTGATGTTGGAAGAAGAAAGCATACACCATGCTAGGGCTTATCCAAAGCCTGCATTGCGTGCTTTTAGTGACTTGAGTAGCTTTCAGGGAAGGCACAGAGTGATTGAGATAAGAGATGAAGTGTGCGAATCCGTTGGTAGGTCAGTGTCAATGGATCATTCGTTTCAAAGGCATGAAGAGGAAGATTCCCAAGTGGAAGGGTGTTCTACCACTGAACCTGGCCCATCAAAGAGATCGCGCAGAGAAAGTTACAAAACAAGGGTGTTGCATTGTGTGTTGAGTCCAATCGCAATGAAGAGATCGTTTTCCAGTCACAGATTCTCACTCAGCAAAAGTAGCAGAGCAAGGCATGGAACTATACCCATCTGA 1050 0.4638 MATVANPRTWIPYMNSKDCSQGFCSLYCPQWCYIVYPPPPPFEYPDDDSSPNFSPLVIAIIGIMATAFLLVSYYTLISKYCGPRESARRDPNDDLQGTHNPSLHEPWNASTTGLDEALIKSIAIFKYKKGDGGSVGVTDCSVCLSEFEDDESVRLLPKCSHVFHAPCIDTWLKSHSSCPLCRAAIFTFNNASVPRAHTPEEEAPSLRNNETSSENESVGSGNEYGVVVMLEEESIHHARAYPKPALRAFSDLSSFQGRHRVIEIRDEVCESVGRSVSMDHSFQRHEEEDSQVEGCSTTEPGPSKRSRRESYKTRVLHCVLSPIAMKRSFSSHRFSLSKSSRARHGTIPI 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00156 349 FunFam E3 ubiquitin-protein ligase ATL6 103 187 - -
Phco8g00156 349 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 186 IPR013083 -
Phco8g00156 349 MobiDBLite consensus disorder prediction 280 310 - -
Phco8g00156 349 Pfam Ring finger domain 139 182 IPR001841 -
Phco8g00156 349 SMART ring_2 140 181 IPR001841 -
Phco8g00156 349 PANTHER RING-H2 FINGER PROTEIN ATL16 41 314 IPR044600 GO:0016567|GO:0016740
Phco8g00156 349 SMART FANCL_C_2 136 187 - -
Phco8g00156 349 CDD RING-H2_EL5-like 139 182 - -
Phco8g00156 349 MobiDBLite consensus disorder prediction 205 220 - -
Phco8g00156 349 SUPERFAMILY RING/U-box 139 188 - -
Phco8g00156 349 MobiDBLite consensus disorder prediction 196 220 - -
Phco8g00156 349 ProSiteProfiles Zinc finger RING-type profile. 140 182 IPR001841 -
Phco8g00156 349 MobiDBLite consensus disorder prediction 86 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00156 Phco-Chr8 1399961 1401010 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g00156 8 1399961 1401010 Phco8g00156 8 1399961 1401010 ECH
Phco4g00511 4 3653050 3654129 Phco8g00156 8 1399961 1401010 PCT