Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00511 ATGGCTTCTCTTGGCAACCCGAAAAGTTGGGTTCCATACATGAACAACAAAGACTGTTCTCAAGGGTTTTGTAGCTTGTATTGTCCACAGTGGTGTTATGTAATCTACCCTCCTCCTCCTCCCTTTGAATTTCCCGCTGATGATTCAAGTCCAAATTTCTCCCCTCTAGTAATTGCAGTCATTGGGGTCTTGGCCAGTGCTTTTCTTCTTGTGAGTTACTATACCTTAATCTCCAAGTACTGTGGCAGCAGAGAATCTTCACAAGGCGAAGACCACGAAGAAAACGTTGAACCGGAAGAGGATCACAACCCTTCGCTCCACGAGCCTTGGCATACTCCAACCATTGGGTTAGATGAGGCTCTGATTAAGTCCATAACAGTTTGCAAGTACAAGAAAGGCGATGGGTTGGTTGAGGTGACAGATTGCCCTGTTTGTCTCTGCGAGTTTGAAGATAATGAAAGTGTTAGACTCTTGCCTAAATGCAACCATGCTTTTCACCTCCCTTGCATTGACACGTGGCTCAAATCTCACTCCAGTTGCCCTCTATGTCGTGCCAGCGTATTCACATTCAATGCTGCAGCACTTCATGTGGCTACCCCAGTCATAGAATTGGGCAGTGAAACTTCAGAAAACCAACATGCAGATGAAAATGTTGCTGTTACTACAAGGGACAGTGATTTGGATGCTGTGGAGGGAGAAATCACACACGGTGGAGCAGTTCCAAAGACTGCATTGCGTGCTTTAAGTGATCTAGGAAATTTGAGGGGAAGCCATAGTGTAATCGAGATTAGAGACGAAGAGTATGACTCCATTAGAAGGACAGTTTCTATGGATCATTCATTTCAAAGGGGTGGAGGTCTTTCAGTGGCTGATGTTCTCGTTTTGAATCAAGAGCATGAAGGATGTTCCAATGGGGCTGGTCCTTCAAAGGGATCAAGAGGTGAAAGTAGCAAGTCTAGCTATAGAAGAAGGGTTTTGCATTGTGTTTTGAGTCCAATTACAATGAAGAGATCATTTTCTAGTGGAAGATTCTCCCTTAGCAGAAATGGCAGAGGAAGGCAATGGGTTCTGCCTGTCTGA 1080 0.4481 MASLGNPKSWVPYMNNKDCSQGFCSLYCPQWCYVIYPPPPPFEFPADDSSPNFSPLVIAVIGVLASAFLLVSYYTLISKYCGSRESSQGEDHEENVEPEEDHNPSLHEPWHTPTIGLDEALIKSITVCKYKKGDGLVEVTDCPVCLCEFEDNESVRLLPKCNHAFHLPCIDTWLKSHSSCPLCRASVFTFNAAALHVATPVIELGSETSENQHADENVAVTTRDSDLDAVEGEITHGGAVPKTALRALSDLGNLRGSHSVIEIRDEEYDSIRRTVSMDHSFQRGGGLSVADVLVLNQEHEGCSNGAGPSKGSRGESSKSSYRRRVLHCVLSPITMKRSFSSGRFSLSRNGRGRQWVLPV 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00511 359 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 117 191 IPR013083 -
Phco4g00511 359 PANTHER RING-H2 FINGER PROTEIN ATL16 41 324 IPR044600 GO:0016567|GO:0016740
Phco4g00511 359 ProSiteProfiles Zinc finger RING-type profile. 142 184 IPR001841 -
Phco4g00511 359 SUPERFAMILY RING/U-box 122 189 - -
Phco4g00511 359 Pfam Ring finger domain 141 184 IPR001841 -
Phco4g00511 359 CDD RING-H2_EL5-like 141 184 - -
Phco4g00511 359 MobiDBLite consensus disorder prediction 85 108 - -
Phco4g00511 359 MobiDBLite consensus disorder prediction 300 320 - -
Phco4g00511 359 SMART ring_2 142 183 IPR001841 -
Phco4g00511 359 FunFam RING-H2 finger protein ATL54 117 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00511 Phco-Chr4 3653050 3654129 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00511 4 3653050 3654129 Phco4g00511 4 3653050 3654129 ECH
Phco4g00511 4 3653050 3654129 Phco8g00156 8 1399961 1401010 PCT