Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g03062 ATGGCTGAGCCAACTGACACTCTGGGTGAATCCCCCGCCGTTGCGTTAATCGGAAAGATAATGATAATCGTTATAGTATTCTTCTTCTTCCTTGTTGTAATTGCTCTCGGCATTCATCTCTTCACTAGAAACTTCTGGTGGCGCAACCCTGCTCCCCAATCACGCCGCCGCCGCCGCCGCTTTGTGTTTTCCTCCGGTCAAGAGGGTGGTCTTCGGAGCGGACTGGATCCCTCCGTGCTGAGCTCCATACCCGTGTTGGTGTTCCAAGGCCAAGACTTCAAGGACGGTTTGGAATGTGCGGTTTGCCTCTCGGAGGTCGTGGAAGGAGAAAAGGCGAGGCTTTTGCCTAAATGCAATCATGGGTTTCACGTTGGTTGTATTGACATGTGGTTCCAGTCCCATTCTACCTGCCCTCTTTGCAGGAACTCTGTTGCTGTTCAATCTGATGAAAGTAATAGTACACACAGCTCAGAATCAGAGTCTCCAACTTTTCCCACTAACGTCTTGGTTTGGGGGGATCACACTCAAATAACTTCTACCGGTGGCGCTTCTTTGGAGGAAGGTGTTTCTCAGCCACCTTGCCCCTCCTCGTCCTCTTCCGCTGCTACTTGTGATGATGATAGTAACACCAGCAATAGACGTCACGGAACCTTGGTCATTGACATACCAAGTGATATCACTTCGACTTCTTTGTCGCCTTCTGCAAGCAGGTTTGCTGAAGATGACTTGAAATCGCCAATTACGGGAAGACTGAGGTCATTGAAGAGGCTTTTGAGCAGGGACAGAAGGTTAAATCCTTGGAGTCCTACTTCTGTAGATGTAGAACAAGCAGCTAATTCAGGGGGAGGAGGAGGACAAAGCTGA 864 0.4954 MAEPTDTLGESPAVALIGKIMIIVIVFFFFLVVIALGIHLFTRNFWWRNPAPQSRRRRRRFVFSSGQEGGLRSGLDPSVLSSIPVLVFQGQDFKDGLECAVCLSEVVEGEKARLLPKCNHGFHVGCIDMWFQSHSTCPLCRNSVAVQSDESNSTHSSESESPTFPTNVLVWGDHTQITSTGGASLEEGVSQPPCPSSSSSAATCDDDSNTSNRRHGTLVIDIPSDITSTSLSPSASRFAEDDLKSPITGRLRSLKRLLSRDRRLNPWSPTSVDVEQAANSGGGGGQS 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g03062 287 CDD RING-H2_EL5-like 98 141 - -
Phco7g03062 287 Pfam Ring finger domain 98 141 IPR001841 -
Phco7g03062 287 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 11 184 - -
Phco7g03062 287 SUPERFAMILY RING/U-box 79 147 - -
Phco7g03062 287 SMART ring_2 99 140 IPR001841 -
Phco7g03062 287 MobiDBLite consensus disorder prediction 264 287 - -
Phco7g03062 287 MobiDBLite consensus disorder prediction 261 287 - -
Phco7g03062 287 FunFam RING-H2 finger protein ATL3 67 146 - -
Phco7g03062 287 MobiDBLite consensus disorder prediction 180 220 - -
Phco7g03062 287 ProSiteProfiles Zinc finger RING-type profile. 99 141 IPR001841 -
Phco7g03062 287 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 151 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g03062 Phco-Chr7 49176435 49177298 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g03062 7 49176435 49177298 Phco1g00491 1 3906342 3907289 PCT