Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00491 ATGGGTCCAACTGCGACCTCCGTGTCTAGTGACAACCCCTTGGATGAATCTGCTACAATTGAGATAACCGGGAAGATCATGGTGGTGGCTATTGTATTCCTTTTCATGGTGGTTGTGTTTGTTCTTGTGCTTCATCTCTATGCAAAATGGTTCTGGTGGAACATGGGGGAGAACGCCGCTCCTCAGCCTCGCCAGCGGCGGCGGAGGCGCCGCCGGTTTGTCTTCGCCCCCGGGCAAGACCCGGTGGTCTATGAGACCCACCAAGTTGGGCTTGACCCTTCAGTTTTAAGGTCCTTGCCAGTGTTGGTGTTCCAACCTGAGGACTTCAAAGAAGGTTTGGAGTGTGCAGTTTGTCTCTCTGAGATTGTTCAAGGGGAAAAGGCCAGGCTTTTACCCAAATGTAATCATGGGTTCCATGTGGATTGCATTGACATGTGGTTCCATTCGCACTCCACTTGCCCTCTTTGTAGGAACCCTGTTGGTTTTGAATCGTCTAAAACAAGTGAAGAGAATAATTTATCAGGGAACATTGATTCATCATCATTAGCACACGAAGAGAATTCAGGTGCTGTGAGTGGTTCACAGTCTTCAATTTTTCCCACAAATGTGTTGGTTTGGGGGAACCAGACACAGGTTAGTTCTTTTGGGGTTTCCTTGGCAGAGGAAGAAGGGAGTTCTCAGCAGCCACCTTCTCCTCCATCATCTACACCATCTTCTTCTTCAGATTGTGGTAATGTTAATGGTAGATGTCATGGAATGTTGGTGATTGATATTCCAAGTGAGTGCACTTCCTCCTCTTTATCCCCTTCTGGAAGTAGGTGTGCTGAAGATGAGGTGAAATCACCAATGGCTGCCACATTGAGGTCATTTAAGAGGCTTTTGAGCCGGGACAAAAAGTCAAGTCCTTGCAGTCCAAGTTCTGTAGATGTGGAACACGCACAGGGCTAG 948 0.4789 MGPTATSVSSDNPLDESATIEITGKIMVVAIVFLFMVVVFVLVLHLYAKWFWWNMGENAAPQPRQRRRRRRRFVFAPGQDPVVYETHQVGLDPSVLRSLPVLVFQPEDFKEGLECAVCLSEIVQGEKARLLPKCNHGFHVDCIDMWFHSHSTCPLCRNPVGFESSKTSEENNLSGNIDSSSLAHEENSGAVSGSQSSIFPTNVLVWGNQTQVSSFGVSLAEEEGSSQQPPSPPSSTPSSSSDCGNVNGRCHGMLVIDIPSECTSSSLSPSGSRCAEDEVKSPMAATLRSFKRLLSRDKKSSPCSPSSVDVEHAQG 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00491 315 ProSiteProfiles Zinc finger RING-type profile. 115 157 IPR001841 -
Phco1g00491 315 MobiDBLite consensus disorder prediction 167 194 - -
Phco1g00491 315 MobiDBLite consensus disorder prediction 262 281 - -
Phco1g00491 315 SUPERFAMILY RING/U-box 95 163 - -
Phco1g00491 315 MobiDBLite consensus disorder prediction 299 315 - -
Phco1g00491 315 FunFam RING-H2 finger protein ATL3 83 162 - -
Phco1g00491 315 MobiDBLite consensus disorder prediction 295 315 - -
Phco1g00491 315 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 19 182 - -
Phco1g00491 315 CDD RING-H2_EL5-like 114 157 - -
Phco1g00491 315 SMART ring_2 115 156 IPR001841 -
Phco1g00491 315 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 165 IPR013083 -
Phco1g00491 315 MobiDBLite consensus disorder prediction 216 243 - -
Phco1g00491 315 Pfam Ring finger domain 114 157 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00491 Phco-Chr1 3906342 3907289 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g00491 1 3906342 3907289 Phco1g00491 1 3906342 3907289 ECH
Phco7g03062 7 49176435 49177298 Phco1g00491 1 3906342 3907289 PCT