Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g02778 ATGGGAACGTTTCACAGCTTCAGAAAAGCCTATGGAGCTCTCAAGGACTCTACCAAGGTTGGCCTTGCCAAAGTCAATAGCGAATACAAGGAATTGGATATTGCAATTGTAAAGGCTACCAATCATGTGGAATACCCTCCCAAGGAACGTCATGTTCGAAAAATATTCTATGCAACATCAGCACACCAGCCACGAGCAGATGTCTCATACTGCATTCATAAACTTTCTAAGAGACTCTCCAAAACACGAAGCTGGATAGTTGCCATAAAGGCATTAATAGTCATTCACAGGACTTTAAGAGAGGGTGATCCTACCTTTAGAGAAGAGATTCTTAACTACTCACGCAGGGGACATATTCTCCAAATATCCAATTTCAAAGATGATTCAAGCCCTCAAGCTTGGGATTGTTCTGCATGGGTTCGAACCTATGCACTATTTTTGGAAGAAAGACTTGAATGCTTTAGAGTGCTTAAATATGATATAGAATCAGAACGTTTAACAAAAGCATCACCTGCTGCAACTAAAGCACACAGTAGAACTCGATCATTGACTAGTGAGGACCTGCTGGGGCAGTTACCTGCACTGCAACAACTCTTATATCGCCTTATTGGTTGTCAACCTGAAGGATGCTCTTATAGCAACTATCTAGTGCAATATGCTTTGGCCCTGGTTTTGAAAGAAAGTTTCAAAATATATTGTGCACTCAATGATGGAATCATCAATCTCGTGGATATGTTCTTCGATATGACAAGGCATGATGCAGTGAAGGCTCTAAACATTTATAAAAGAGCTGGTCAACAGGCTGAGAATCTTTCTGACTTCTATGAATATTGCAAGGGCTTGGAACTTGCCAGGAATTTCCAGTTTCCAACACTGAGACAGCCACCTCCCTCTTTCCTTGCAACTATGGAAGAATACATTAGAGAAGCACCTCAAACAGGATATGTTAACAAAAGATTGGAATATCAAGAAAATGATGAATCATCTAAAGAAGATTCAGAATCCAGTGAAACTGAAGAGCCTCAAGAAAATGAAGAACAATATGAGGAAGTCAATGAGGAGGATTCGGTAGCAGATGAAGAAGTACATTCCAAGGAGGAGGAGGAAGAGGTGGCGGTTGAGCCTCCTCCTTTGATATCAACTGATGATGGTACAAATGATTTGTTGGGACTCAATGAAATAAATCTAAAAGCTATGGAACTGGAGGAAAACAATGCTATGGCTCTTGCAATTGTACCACCTGGTGGAAGTAATCCAAACAATCTTGCTTTGAGTAACATTGATGGTGCAACTGGTTGGGAACTTTCATTAGTTACAACACCAAGTAACCATACTAGTCAAACCACAGATCGCAGAATGGCCGGTGGGTTTGATAACCTATTATTGAACAGTCTGTATGAAGATGAAAATGCCAGAAGACAGCTTCAACTCCAAAATGCAGGTTATGGACATGGGGGAACCATGGATGTACAAAACCCTTTTGATCATTATAACCAACAAGATCCATTTGCAATGTCCAACAACATAGCACCCCCACCCAATGTGCAAATGGCACAAATGGCTCAACAACAACAACAACAAATGATGTTCCAACAACAACAAATGATGTACCAACAGCCACAACAACACAACATGATGATGGTCCCTCACCAGCAGCAACCACATAACCAATACTCTCAACAGAATCCAGGTTCTCATAATCCATTTGGAGATCCTTTGCCCGGACCAAACTATAATCAGAATTACACACCCCAACAAGGAAATTACAATTTAATGTAG 1779 0.4075 MGTFHSFRKAYGALKDSTKVGLAKVNSEYKELDIAIVKATNHVEYPPKERHVRKIFYATSAHQPRADVSYCIHKLSKRLSKTRSWIVAIKALIVIHRTLREGDPTFREEILNYSRRGHILQISNFKDDSSPQAWDCSAWVRTYALFLEERLECFRVLKYDIESERLTKASPAATKAHSRTRSLTSEDLLGQLPALQQLLYRLIGCQPEGCSYSNYLVQYALALVLKESFKIYCALNDGIINLVDMFFDMTRHDAVKALNIYKRAGQQAENLSDFYEYCKGLELARNFQFPTLRQPPPSFLATMEEYIREAPQTGYVNKRLEYQENDESSKEDSESSETEEPQENEEQYEEVNEEDSVADEEVHSKEEEEEVAVEPPPLISTDDGTNDLLGLNEINLKAMELEENNAMALAIVPPGGSNPNNLALSNIDGATGWELSLVTTPSNHTSQTTDRRMAGGFDNLLLNSLYEDENARRQLQLQNAGYGHGGTMDVQNPFDHYNQQDPFAMSNNIAPPPNVQMAQMAQQQQQQMMFQQQQMMYQQPQQHNMMMVPHQQQPHNQYSQQNPGSHNPFGDPLPGPNYNQNYTPQQGNYNLM 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g02778 592 ProSiteProfiles ENTH domain profile. 24 161 IPR013809 -
Phco7g02778 592 MobiDBLite consensus disorder prediction 550 592 - -
Phco7g02778 592 Gene3D - 6 161 IPR008942 -
Phco7g02778 592 SUPERFAMILY GAT-like domain 178 309 - -
Phco7g02778 592 PANTHER CLATHRIN ASSEMBLY PROTEIN 7 529 IPR045192 GO:0048268|GO:0072583
Phco7g02778 592 MobiDBLite consensus disorder prediction 574 592 - -
Phco7g02778 592 SUPERFAMILY ENTH/VHS domain 31 162 IPR008942 -
Phco7g02778 592 Pfam ANTH domain 31 309 IPR011417 GO:0005543
Phco7g02778 592 Gene3D ANTH domain 174 326 IPR014712 GO:0005545|GO:0030136|GO:0030276|GO:0048268
Phco7g02778 592 MobiDBLite consensus disorder prediction 327 367 - -
Phco7g02778 592 MobiDBLite consensus disorder prediction 322 386 - -
Phco7g02778 592 SMART enth_2 30 161 IPR013809 -
Phco7g02778 592 CDD ANTH_N 32 154 - -
Phco7g02778 592 MobiDBLite consensus disorder prediction 550 567 - -
Phco7g02778 592 FunFam Clathrin assembly protein AP180 6 161 - -
Phco7g02778 592 FunFam Putative clathrin assembly protein 173 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g02778 Phco-Chr7 46857518 46862866 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g02778 7 46857518 46862866 Phco7g02778 7 46857518 46862866 ECH
Phco8g01836 8 19298497 19303994 Phco7g02778 7 46857518 46862866 PCT