Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g02280 ATGGAATCTAGCAACTTCAGTTTGCTCTTCTTTTACGTCATTTTTCTTGCTATACTCCCCACTCTTCAGGCTAATATAGGTCAGTTCGACCATGTCTGGCATAGGAGATTAAAGGAAGCAAGGGAAGCTGCAAAACAGGCTTACAAGCCAAACCCCATGAAAGTTACCGCTGAATTCAATACACACGTCATGAGGGCGATGAAAGGCTCCAACAGCACGAGAAGGGGCTTGGGGAAAAACGATGCTGAATGCCATGCAGCAAACCCCATTGACAAATGTTGGAGATGTGACCCAAATTGGGAGAAAAATCGCAAGAAGCTAGCAGATTGTGCGATTGGGTTTGGCCACGGCACAACTGGGGGAAAAGATGGGAAAATCTACGTGGTAAGCGACAATTCCGACAAGGAGCTAGTGAACCCTAAACCAGGGACATTGAGACATGCAGTTATTCAGACAGAGCCACTGTGGATCACTTTTGCGCGAAGCATGACCATTAGGCTCACTGCAGAGCTTCTTATAACGGATAACAAGACCATCGATGCACGTGGTTCCAATGTGCACATTCAAGATGGTGCCCAAATGACGATACAATTTGCGAAAAATGTCATCATTCACGGATTGCACATCCACGACATTCAGAAATTTGACGGTGGCCTCATAAGAGACTCCATGAGCCACTACGGAGTTCGTGCCATGAGTGATGGCGATGGGATTTCAGTCTTTGGATCCACAAATGTTTGGATTGATCATGTTTCCATGACCAATTGCTCTGATGGCCTCATCGATGTCGTTAGTGCTTCAACGGCTGTTACCATCTCCAATTGCCATTTTGTCAAGCACAACGACGTTTTGTTATTCGGCGCCACTGATACCTTCTCAGGAGATAAAGTGATGCAAGTGACTTTGGCTTTCAACCATTTCGGGAAAGGATTGGTTCAGAGAATGCCAAGGTGTAGATGGGGCTTCTTTCACATTGTTAACAACGACTACACTCATTGGCTAATGTACGCCGTAGGTGGCAGCCAACAACCCACCATCATCAGCCACGGGAACCGTTTTGTCGCCCCACAAGACAGAAATGCAAAAGAAGTGACAAAAAGGGATTACGCTCCGGAAAGTGAGTGGAAGAATTGGAATTGGAGATCAGAGGGTGATTTATTCGAGAATGGAGCATTCTTTGTTGAGTCTGGGAAAAAAGTTACAAAATTTCCCAAGACAGACATCATAGCACAGTCTGGGAAATCTGTAGCTGCTCTCACAAAAGATGCGGGTCCTATAAAATGTATTCTAAACAAGCCCTGCTGA 1305 0.4559 MESSNFSLLFFYVIFLAILPTLQANIGQFDHVWHRRLKEAREAAKQAYKPNPMKVTAEFNTHVMRAMKGSNSTRRGLGKNDAECHAANPIDKCWRCDPNWEKNRKKLADCAIGFGHGTTGGKDGKIYVVSDNSDKELVNPKPGTLRHAVIQTEPLWITFARSMTIRLTAELLITDNKTIDARGSNVHIQDGAQMTIQFAKNVIIHGLHIHDIQKFDGGLIRDSMSHYGVRAMSDGDGISVFGSTNVWIDHVSMTNCSDGLIDVVSASTAVTISNCHFVKHNDVLLFGATDTFSGDKVMQVTLAFNHFGKGLVQRMPRCRWGFFHIVNNDYTHWLMYAVGGSQQPTIISHGNRFVAPQDRNAKEVTKRDYAPESEWKNWNWRSEGDLFENGAFFVESGKKVTKFPKTDIIAQSGKSVAALTKDAGPIKCILNKPC 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g02280 434 PANTHER PECTATE LYASE 18-RELATED 40 431 IPR045032 GO:0030570
Phco7g02280 434 PRINTS Pollen allergen Amb family signature 134 159 IPR018082 -
Phco7g02280 434 PRINTS Pollen allergen Amb family signature 110 127 IPR018082 -
Phco7g02280 434 PRINTS Pollen allergen Amb family signature 314 333 IPR018082 -
Phco7g02280 434 PRINTS Pollen allergen Amb family signature 378 402 IPR018082 -
Phco7g02280 434 PRINTS Pollen allergen Amb family signature 170 186 IPR018082 -
Phco7g02280 434 PRINTS Pollen allergen Amb family signature 336 355 IPR018082 -
Phco7g02280 434 PRINTS Pollen allergen Amb family signature 234 255 IPR018082 -
Phco7g02280 434 Gene3D - 87 427 IPR012334 -
Phco7g02280 434 SMART amb_all 162 359 IPR002022 -
Phco7g02280 434 Pfam Pectate lyase 175 353 IPR002022 -
Phco7g02280 434 Pfam Pectate lyase, N terminus 25 77 IPR007524 GO:0030570
Phco7g02280 434 SUPERFAMILY Pectin lyase-like 88 405 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g02280 Phco-Chr7 40178840 40180617 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g02797 3 54400304 54401795 Phco7g02280 7 40178840 40180617 ECH
Phco7g02280 7 40178840 40180617 Phco7g02280 7 40178840 40180617 ECH