Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g02797 ATGGTAGGAAGTTCAAGCAAGGTTAGCATTATTATCTTGGTCGCTTTTGCCATTACTATTCCATGCCTTGAGGGTGGCATTGGTGAGTTTGACGACTTTCTCAAAGGACAAGCTCTTGAGGCCCATGAAATCGCTCTCGAATCCTACGTGCCTGACCCTGTAAACATTACTGACGAGCTTAATGTAAATGTTCACGGGGCTTTGACGCAGGCGTTAAAGGAGGAATCAAACCACACAAGGAGGGAACTAAAGCAGAAATACGGTGGACCATGCTTGGCCCTAAACCCAATCGATCGTTGTTGGAGGTGCAAGAAAAACTGGGCCAAAAACCGTTTTAAGTTAGCCGATTGCGCCAAGGGTTTTGGAAGAAAGGCCACGGGAGGACTCGGAGGCAAAATGTACTATGTCAATGATCCCTCTGACGATGATCCCATTAACCCTAAACCCGGAACCCTACGGTTCGGTGTTATCCAAAAGGAGCCTCTGTGGATCGTATTTGCACGAAGCATGATCATCAAGTTGAATTACGAGTTGTTGATTTCCTCTGACAAAACCATCGACGGTCGCGGGGCGAATGTGGTGATCAAGGATGGTTCAGGCCTTACCATGCAGTTTGTGAACAACGTTATTATCCATGGGCTTAGAATACAAAATATCAAGTCCATGCCAGGTGGCACGATTAGGGATTCTTGGAACCATATAGGAGTAAGAACCAAGGCTGATGGGGATGCCGTCTCCGTTTTTGGCTCTTCAAACATTTGGATCGATCATCTGTCACTCTCTGATTGTGAGGATGGTCTCGTGGATGTTATCCAGGGTTCCACTGGAATCACCATCTCAAATTGTCACATGACCAAACATAACGATGTGATGTTATTTGGAGCCAGCGACACCTACACAGGGGACAAGATAATGCAGGTGACGGTGGCATTCAACCATTTCGGGCAGGGTCTGATTCAGAGAATGCCCCGATGCAGATGGGGTTTCTTCCACGTGTTGAATAACGATTACACTCACTGGCTGATGTATGCAATTGGTGGGAGCTCAGGGCCGACGATTCTGAGCCAAGGAAACCGGTTCATTGCACCAAACAACGACGCTGCGAAGGAAGTGACGCACAGGGACTATGCAGATCCTGCTGTGTGGGAAAAATGGCAATGGAGATCAGAGAACGATGTGTTCATGAATGGCGCTACCTTTACTCAGTCAGGGCCACCTCTTGGGAAGCTTCCATTCAACAAAGGGTTCCTCATGAAACCTAGACATGGCTCACAGGCCAACAGGCTAACACGCTTTGCTGGAGCCCTCAATTGCAAGGTGAATAACCCTTGCTAG 1335 0.4794 MVGSSSKVSIIILVAFAITIPCLEGGIGEFDDFLKGQALEAHEIALESYVPDPVNITDELNVNVHGALTQALKEESNHTRRELKQKYGGPCLALNPIDRCWRCKKNWAKNRFKLADCAKGFGRKATGGLGGKMYYVNDPSDDDPINPKPGTLRFGVIQKEPLWIVFARSMIIKLNYELLISSDKTIDGRGANVVIKDGSGLTMQFVNNVIIHGLRIQNIKSMPGGTIRDSWNHIGVRTKADGDAVSVFGSSNIWIDHLSLSDCEDGLVDVIQGSTGITISNCHMTKHNDVMLFGASDTYTGDKIMQVTVAFNHFGQGLIQRMPRCRWGFFHVLNNDYTHWLMYAIGGSSGPTILSQGNRFIAPNNDAAKEVTHRDYADPAVWEKWQWRSENDVFMNGATFTQSGPPLGKLPFNKGFLMKPRHGSQANRLTRFAGALNCKVNNPC 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g02797 444 Gene3D - 94 437 IPR012334 -
Phco3g02797 444 PANTHER PECTATE LYASE 18-RELATED 42 442 IPR045032 GO:0030570
Phco3g02797 444 SMART amb_all 169 366 IPR002022 -
Phco3g02797 444 PRINTS Pollen allergen Amb family signature 385 409 IPR018082 -
Phco3g02797 444 PRINTS Pollen allergen Amb family signature 117 134 IPR018082 -
Phco3g02797 444 PRINTS Pollen allergen Amb family signature 343 362 IPR018082 -
Phco3g02797 444 PRINTS Pollen allergen Amb family signature 321 340 IPR018082 -
Phco3g02797 444 PRINTS Pollen allergen Amb family signature 415 438 IPR018082 -
Phco3g02797 444 PRINTS Pollen allergen Amb family signature 177 193 IPR018082 -
Phco3g02797 444 PRINTS Pollen allergen Amb family signature 141 166 IPR018082 -
Phco3g02797 444 PRINTS Pollen allergen Amb family signature 241 262 IPR018082 -
Phco3g02797 444 Pfam Pectate lyase 179 360 IPR002022 -
Phco3g02797 444 Pfam Pectate lyase, N terminus 27 83 IPR007524 GO:0030570
Phco3g02797 444 SUPERFAMILY Pectin lyase-like 95 435 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g02797 Phco-Chr3 54400304 54401795 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g02797 3 54400304 54401795 Phco3g02797 3 54400304 54401795 ECH
Phco3g02797 3 54400304 54401795 Phco7g02280 7 40178840 40180617 ECH