Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g02233 ATGTGTCAGCTTGTTGGCATGACGTTGGTTAAAGCAAGAAAGAACATCTTTGCTCCCCCCCCCCAACATCTATTTATATCCTACCCATGCTCCTTTCATTTTCCTCATCGCTCATACTCTCTCTCTAACCCCGTCAAGTTCTTACTCTATTTATCACTCAGATATTTTGGGACGCTAGAAAAGATGGTGTTTTTGGGCCTTCTCTTTCTGGGGTTTCTTTCTCTGGCTTCACCTGTCTCTGCTGATTCTGGCTATGGTTGGATGAGTGCTCATGCAACCTTTTATGGAGGGGGTGATGCTTCTGGCACTATGGGTGGAGCATGTGGGTACGGGAACTTGTATAGCCAGGGTTATGGAACAAACAGTGCTGCTTTGAGCACAGCTTTGTTCAACAATGGTTTAAGCTGTGGGGCATGTTTCGAGATTAAGTGTGTTGATGACAAAAGGTGGTGCCTTCCACGCTCAGTTGTGGTCACTGCAACCAATTTCTGTCCCCCAAACAATGCCCTCCCTAATACTGCAGGAGGATGGTGCAACCCTCCCCTTCACCATTTCGACCTTTCTCAACCTGTCTTCCAACAAATTGCTCAATATAGAGCTGGAATAGTACCCATCGCTTACAGAAGGGTCCCTTGCCAAAAGAGAGGAGGCATCAGATTCACCATCAACGGCCACTCATACTTTAACCTAATCCTAGTCACCAACGTTGGAGGTGCTGGTGATGTTCATGGAGTTTCCATCAAAGGTTCAAGAACAAATTGGCAAACTCTGACCAGAAACTGGGGTCAGAACTGGCAAAGCAACGCTTACCTCAATGGACAAAGCCTCTCTTTTAAGGTTACCACCAGCGACGGACGCACCGTGGTCTCTTACAATGTTGCACCCCCAAGTTGGTCCTTTGGCCAAACCTTCAATGGCCACCAATTCATTTAA 933 0.4695 MCQLVGMTLVKARKNIFAPPPQHLFISYPCSFHFPHRSYSLSNPVKFLLYLSLRYFGTLEKMVFLGLLFLGFLSLASPVSADSGYGWMSAHATFYGGGDASGTMGGACGYGNLYSQGYGTNSAALSTALFNNGLSCGACFEIKCVDDKRWCLPRSVVVTATNFCPPNNALPNTAGGWCNPPLHHFDLSQPVFQQIAQYRAGIVPIAYRRVPCQKRGGIRFTINGHSYFNLILVTNVGGAGDVHGVSIKGSRTNWQTLTRNWGQNWQSNAYLNGQSLSFKVTTSDGRTVVSYNVAPPSWSFGQTFNGHQFI 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g02233 310 SMART dpbb_1 122 207 IPR007112 -
Phco7g02233 310 Pfam Expansin C-terminal domain 218 295 IPR007117 -
Phco7g02233 310 FunFam Expansin 217 309 - -
Phco7g02233 310 SUPERFAMILY PHL pollen allergen 214 305 IPR036749 -
Phco7g02233 310 CDD DPBB_EXPA_N 86 212 - -
Phco7g02233 310 SUPERFAMILY Barwin-like endoglucanases 72 235 IPR036908 -
Phco7g02233 310 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 105 217 IPR007112 -
Phco7g02233 310 Gene3D - 217 309 IPR036749 -
Phco7g02233 310 PRINTS Expansin/Lol pI family signature 104 122 IPR007118 GO:0005576
Phco7g02233 310 PRINTS Expansin/Lol pI family signature 292 306 IPR007118 GO:0005576
Phco7g02233 310 PRINTS Expansin/Lol pI family signature 86 101 IPR007118 GO:0005576
Phco7g02233 310 PRINTS Expansin/Lol pI family signature 126 144 IPR007118 GO:0005576
Phco7g02233 310 PRINTS Expansin/Lol pI family signature 200 216 IPR007118 GO:0005576
Phco7g02233 310 PRINTS Expansin/Lol pI family signature 254 268 IPR007118 GO:0005576
Phco7g02233 310 FunFam Expansin 77 213 - -
Phco7g02233 310 PANTHER EXPANSIN-A15 71 309 IPR002963 GO:0009664
Phco7g02233 310 Pfam Lytic transglycolase 123 207 IPR009009 -
Phco7g02233 310 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 227 306 IPR007117 -
Phco7g02233 310 PRINTS Expansin signature 156 166 IPR002963 GO:0009664
Phco7g02233 310 PRINTS Expansin signature 175 192 IPR002963 GO:0009664
Phco7g02233 310 PRINTS Expansin signature 216 228 IPR002963 GO:0009664
Phco7g02233 310 PRINTS Expansin signature 292 308 IPR002963 GO:0009664
Phco7g02233 310 PRINTS Expansin signature 228 249 IPR002963 GO:0009664
Phco7g02233 310 PRINTS Expansin signature 192 205 IPR002963 GO:0009664
Phco7g02233 310 PRINTS Expansin signature 263 284 IPR002963 GO:0009664
Phco7g02233 310 PRINTS Expansin signature 117 131 IPR002963 GO:0009664
Phco7g02233 310 PRINTS Expansin signature 144 155 IPR002963 GO:0009664
Phco7g02233 310 Gene3D - 74 213 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g02233 Phco-Chr7 39419246 39421567 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g01972 4 39075564 39078243 Phco7g02233 7 39419246 39421567 ECH
Phco7g02233 7 39419246 39421567 Phco7g02233 7 39419246 39421567 ECH