Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g01972 ATGAGGTTTCTCCAACTGACCCAATTTGTCATAAACCATGTGCTGCTGCTTGTTAACCATCACAGCCAAAAACGCTATGTCCCACATGGATTTTGGAGATTTTCCCGCTCCGAACAACACGGTTTCCAGCCACAAAACACCCTTTGCAACATCAAAAGTGGGCCTCTGGTAACTTGTACGGTCGCACCCCCACACTTTCTTCACAACACTGCTTCTCTCTACACTACCTGCTGCTCCTTCCCTTGTCCCTCACTATTGAAGAAAATGGCTCTTGTTATCTTGATGGGTTTTCTCACAATATTCTCCTCTGCTCATGCTTATGATGGAGGGTGGACTACTGCGCATGCCACTTTCTATGGTGGGAGTGATGCATCAGGGACAATGGGTGGGGCATGTGGGTATGGGAACCTCTACAGCCAAGGCTATGGTACAAACACTGCTGCTTTGAGCACTGCACTGTTCAACAATGGTTTAAGCTGTGGCTCTTGCTTTGAGATTAGGTGTGCCAATGACCACAAGTGGTGCCTTCCAGGCTCCATTTTGGTCACTGCCACCAATTTCTGTCCACCAAACAATGCCTTACCTAACAATGCTGGTGGCTGGTGTAACCCTCCTCTTCAACACTTTGATCTCGCTCAACCCGTCTTCCTACGCATTGCTCAATACCGTGCTGGAATTGTGCCTGTTTCCTACAGAAGGGTGCCGTGCAGGAGAAAGGGAGGGATCAGGTTCACTATCAATGGGCATTCTTACTTCAATCTAGTCCTCATCACAAACGTTGGTGGTGCTGGGGATGTGCACGGTGTGGCCGTTAAAGGTTCAAGAACTGGTTGGACGCCAATGTCGAGGAACTGGGGTCAGAACTGGCAGAGCAACAACTATCTGAATGGTCAAAGCCTTTCCTTCAAGGTTACAACAAGTGATGGCCGAACCGTGGTGTCTAACAATGTTGCTCCTGCTGGCTGGTCATTTGGACAAACCTACACTGGTGCTCAGTTCCGGTAG 1005 0.4905 MRFLQLTQFVINHVLLLVNHHSQKRYVPHGFWRFSRSEQHGFQPQNTLCNIKSGPLVTCTVAPPHFLHNTASLYTTCCSFPCPSLLKKMALVILMGFLTIFSSAHAYDGGWTTAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCFEIRCANDHKWCLPGSILVTATNFCPPNNALPNNAGGWCNPPLQHFDLAQPVFLRIAQYRAGIVPVSYRRVPCRRKGGIRFTINGHSYFNLVLITNVGGAGDVHGVAVKGSRTGWTPMSRNWGQNWQSNNYLNGQSLSFKVTTSDGRTVVSNNVAPAGWSFGQTYTGAQFR 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g01972 334 FunFam Expansin 101 237 - -
Phco4g01972 334 PANTHER EXPANSIN-A15 88 333 IPR002963 GO:0009664
Phco4g01972 334 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 129 241 IPR007112 -
Phco4g01972 334 FunFam Expansin 241 333 - -
Phco4g01972 334 SMART dpbb_1 146 231 IPR007112 -
Phco4g01972 334 CDD DPBB_EXPA_N 110 236 - -
Phco4g01972 334 Pfam Expansin C-terminal domain 242 319 IPR007117 -
Phco4g01972 334 PRINTS Expansin/Lol pI family signature 128 146 IPR007118 GO:0005576
Phco4g01972 334 PRINTS Expansin/Lol pI family signature 150 168 IPR007118 GO:0005576
Phco4g01972 334 PRINTS Expansin/Lol pI family signature 110 125 IPR007118 GO:0005576
Phco4g01972 334 PRINTS Expansin/Lol pI family signature 224 240 IPR007118 GO:0005576
Phco4g01972 334 PRINTS Expansin/Lol pI family signature 316 330 IPR007118 GO:0005576
Phco4g01972 334 PRINTS Expansin/Lol pI family signature 278 292 IPR007118 GO:0005576
Phco4g01972 334 Pfam Lytic transglycolase 146 231 IPR009009 -
Phco4g01972 334 PRINTS Expansin signature 141 155 IPR002963 GO:0009664
Phco4g01972 334 PRINTS Expansin signature 240 252 IPR002963 GO:0009664
Phco4g01972 334 PRINTS Expansin signature 180 190 IPR002963 GO:0009664
Phco4g01972 334 PRINTS Expansin signature 287 308 IPR002963 GO:0009664
Phco4g01972 334 PRINTS Expansin signature 316 332 IPR002963 GO:0009664
Phco4g01972 334 PRINTS Expansin signature 168 179 IPR002963 GO:0009664
Phco4g01972 334 PRINTS Expansin signature 199 216 IPR002963 GO:0009664
Phco4g01972 334 PRINTS Expansin signature 216 229 IPR002963 GO:0009664
Phco4g01972 334 PRINTS Expansin signature 252 273 IPR002963 GO:0009664
Phco4g01972 334 SUPERFAMILY PHL pollen allergen 238 330 IPR036749 -
Phco4g01972 334 Gene3D - 98 237 IPR036908 -
Phco4g01972 334 SUPERFAMILY Barwin-like endoglucanases 110 259 IPR036908 -
Phco4g01972 334 Gene3D - 241 333 IPR036749 -
Phco4g01972 334 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 251 330 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g01972 Phco-Chr4 39075564 39078243 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g01972 4 39075564 39078243 Phco4g01972 4 39075564 39078243 ECH
Phco4g01972 4 39075564 39078243 Phco7g02233 7 39419246 39421567 ECH