Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g02202 ATGAAGCGAAAGCTCGAAACGCTGTTTATGTTAACACGAAAACGATCGATTCAGTTTCTAATCGGTGCGCTTTTCTTCTACCTCCTACTCGTTACACTCGAAATCCCTTTTGTTTTCAAAACCGACTTCACCACCGTCGCCACGCGCCCTCTCAAGCTCCTAAGCGAGGAAGACTCGCAACTTAAGGACTCCCCGGCGCGTCCTTTAAAAACGGTTTCCAACGCTCACTCGCCGAGTCAACTCGCTAGCCGCAGTGTCCTTTCGGCGTTGGTCCTAAACGATGCCGCGTTTGAATCCAAAGGTAACGACGGGTCTTTGGAGCTCTACAAGCTTGTAAAGCACGCGCGCCGGGTGGGACGGAGACTCTGGGAGGACATCGAATCTGGAAAGTCACGGACCGTTGTTTCGAAGCCCGAGAACCGGTCCAGTTCGTGTCCTGGTTCGATTTCTCTGTCCGTTTCGGACGCCGTGGGCGTCGTGCCGCTGCCGTGTGGGCTCACATTGGGCTCACACGTGACGGTCGTTGGGAAACCGTTGGCGGCGCGGCCGGATTTCGAGCCGAAGATAGCGGTGGTGACGGAGGATGAACCGGTGATGGTGTCTCAGTTCGTGGTGGAGTTGCAGGGGCTGAAGACGGTGGACGGTGAAGAGCCTCCTAGGGTTTTTCACTTCAACCCGAGGTTGAAGGGGGATTGGAGTGGGAAGCCTGTGATTGAACTCAACACGTGTTATCGCATGCAGTGGGGTTCCGCTCTCAGGTGCGACGGTTGGAAATCCAAGGCCGATGAAGATACTGTGGATAGGATGGTGAAGTGCGAGAAGTGGATTAAGGATGATGAAGATCACTTAGAGGAATCTAAGTCGACTTGGTGGTTGAAAAGACTGATAGGGCGCACCAAGAAAGTAAACGTTGAGTGGCCATTCCCATTTTCTGAGGGGAAGCTATTTGTTCTTACTGTTAGTGCTGGGTTGGAGGGGTATCATGTTACTGTTGATGGGAGACATGTGACATCTTTTCCTTATCGCGCTGGTTTTACTCTTGAGGATGCCACCGGGCTTTCGTTGACTGGAGACATTGATGTTCACTCTGTATTTGCAGCGTCTTTGCCTTCATCGCATCCCAGTTTTTCCCCACAGAGGCATCTCGAATTTTCCACCAGGTGGCGTGCCCAGCCACTTTCTGACTCTGGCGTAGAATTGTTCATTGGTGTCCTCTCAGCTGGAAACCATTTTTCTGAGCGGATGGCTGTGAGAAAGTCATGGATGCAGCACAGGCTTGTCAAATCTGGAGCAGTGGTTGCTCGATTCTTTGTTGCACTGCATGCAAGACAGGAAATTAATGTAGAGTTGAAGAAGGAAGCAGAATTTTTTGGTGATATTGTTATAGTGCCTTACTTAGATAACTATGATCTTGTTGTGTTGAAAACAGTGGCCATATGTGAATATGGGGTTCATACTGTTTCTGCTAAGTATATCATGAAAGGCGATGATGATACTTTTGTTAGAGTGGATGCCGTTATCAGTGAAGCAAGGAAGTTTCCAGATGATACCAGCTTTTATATCGGTAACATAAATTATTATCATAAACCCTTGCGATATGGGAAATGGGCAGTGACCTATGAAGAATGGCCAGAAGAGGATTACCCACCCTACGCTAATGGCCCGGGTTATATTTTGTCATCAGATATTGCACTATATATTGTATCTGAATTTGAAATGCATAAATTAAGGTTGTTTAAGATGGAAGATGTGAGTATGGGAATGTGGGTGGAGCAATTTAACAACTCGAAACCTGTACACTACTCTCATAGCTTGAAGTTCTGCCAATTTGGTTGCATAGAAGACTATTACACCGCCCATTACCAATCGCCCAGGCAGATGATGTGTCTGTGGGATAAACTGCAAAGGCAGACAAGGCCTCAGTGCTGTGACATGAGATGA 1941 0.4817 MKRKLETLFMLTRKRSIQFLIGALFFYLLLVTLEIPFVFKTDFTTVATRPLKLLSEEDSQLKDSPARPLKTVSNAHSPSQLASRSVLSALVLNDAAFESKGNDGSLELYKLVKHARRVGRRLWEDIESGKSRTVVSKPENRSSSCPGSISLSVSDAVGVVPLPCGLTLGSHVTVVGKPLAARPDFEPKIAVVTEDEPVMVSQFVVELQGLKTVDGEEPPRVFHFNPRLKGDWSGKPVIELNTCYRMQWGSALRCDGWKSKADEDTVDRMVKCEKWIKDDEDHLEESKSTWWLKRLIGRTKKVNVEWPFPFSEGKLFVLTVSAGLEGYHVTVDGRHVTSFPYRAGFTLEDATGLSLTGDIDVHSVFAASLPSSHPSFSPQRHLEFSTRWRAQPLSDSGVELFIGVLSAGNHFSERMAVRKSWMQHRLVKSGAVVARFFVALHARQEINVELKKEAEFFGDIVIVPYLDNYDLVVLKTVAICEYGVHTVSAKYIMKGDDDTFVRVDAVISEARKFPDDTSFYIGNINYYHKPLRYGKWAVTYEEWPEEDYPPYANGPGYILSSDIALYIVSEFEMHKLRLFKMEDVSMGMWVEQFNNSKPVHYSHSLKFCQFGCIEDYYTAHYQSPRQMMCLWDKLQRQTRPQCCDMR 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g02202 646 PANTHER BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE 379 595 IPR002659 GO:0006486|GO:0016020|GO:0016758
Phco7g02202 646 Gene3D - 157 274 - -
Phco7g02202 646 SMART galectin_3 159 367 IPR001079 GO:0030246
Phco7g02202 646 SUPERFAMILY Concanavalin A-like lectins/glucanases 160 365 IPR013320 -
Phco7g02202 646 Gene3D - 391 643 - -
Phco7g02202 646 Pfam Galactosyltransferase 413 593 IPR002659 GO:0006486|GO:0016020|GO:0016758
Phco7g02202 646 SMART Gal_bind_lectin_2 162 366 IPR001079 GO:0030246
Phco7g02202 646 FunFam Hydroxyproline O-galactosyltransferase GALT2 281 365 - -
Phco7g02202 646 CDD GLECT 159 365 IPR001079 GO:0030246
Phco7g02202 646 FunFam Hydroxyproline O-galactosyltransferase 391 634 - -
Phco7g02202 646 Gene3D - 288 368 - -
Phco7g02202 646 ProSiteProfiles Galactoside-binding lectin (galectin) domain profile. 158 367 IPR001079 GO:0030246
Phco7g02202 646 FunFam Hydroxyproline O-galactosyltransferase GALT4 157 274 - -
Phco7g02202 646 Pfam Galactoside-binding lectin 160 365 IPR001079 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g02202 Phco-Chr7 38881678 38884738 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g02202 7 38881678 38884738 Phco7g02202 7 38881678 38884738 ECH
Phco8g01286 8 13467350 13470963 Phco7g02202 7 38881678 38884738 PCT