Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g03190 ATGTCCGGGGCAGGCCAAGCCATAGACATGGAGAACGTGGGGTTTTCGAAAGCGAAAGCCGATCATGGCCGTGGCAAGAAAGCGGGTCCGGTTTCGATGGATCACGTGCTTCTTGCCTTACGTGAGACCAAAGACGAGAGGGATCTTCGAATTCGGAGTCTCTTCAATTTCTTCGATGCTGCTAATAATGGGTACTTGGACTATGCTCACATTGAGGCTGGTTTGTCTGCACTGCAGATTCCCCCTGAGTATAAATATGCCAAGGAGCTTTTCAAGGTGTGTGATGCTGATAGGGATGGTAGGATTGATTACCATGATTTTAGGCGTTACATGGATGACAAGGAGTTGGAGCTTTATCGCATATTTCAGGCCATTGATGTTGAGCACAATGGCTGCATTCTCCCTGAAGAGCTTTGGGATGCACTTGTCAGGGCTGGGATTGAAATTGATGAGGTGGAGCTTGCTCGCTTTGTGGAGCATGTTGATAAGGATAATAACGGAATTATCACTTTTGAAGAGTGGAGAGATTTTCTTCTACTTTATCCTCATGAAGCAACTATTGAAAATATATATCAGCATTGGGAGAGGGTGTGCCTTGTTGACATTGGGGAACAAGCTGTCATTCCTGAAGGCATCGGCAAACATGTGCACAGGAGCAGATATTTTATTGCTGGGGGAATAGCAGGAGCTGCTTCTCGTACAGCAACTGCTCCTCTTGATCGTCTAAAGGTGGTTTTGCAAATTCAGACTGGACGAGCTTCTATTATGCCAGCAGTGATGAAGATATGGCAACGAGATGGTTTATTAGGGTTTTTCCGAGGTAATGGACTGAATGTTGTCAAGGTAGCTCCAGAGAGTGCCATCAAGTTTTATGCCTATGAAATGCTGAAAAATGTAATTGGAGATGCTCAACAGGGAAAGAAGGATATCGGTACTGCAGGAAGACTTTTTGCAGGTGGTATGGCTGGTGCAGTTGCACAGATTGCTATCTATCCAATGGATCTTGTCAAAACTAGATTACAGACTTGTGCTTCTGATGGTGGAAGGGTTCCAAAGCTTGGTACACTTACAAAGGATATATGGGTCCATGAGGGACCTCGGGCTTTCTACAGAGGGCTTGTTCCATCTCTTCTGGGTATGATTCCGTATGCAGGGATTGATCTCACTGCATACGACACCTTGAAAGATCTATCAAAGAGATATATTCTTTATGACAGTGATCCTGGTCCTCTAGTACAACTTGGATGTGGGACAATTTCAGGTGCTCTTGGAGCTACTTGTGTCTATCCGCTGCAGGTTATTCGAACAAGGCTGCAGGCACAACCTATCAACAGTACCGGTGCTTACAAGGGAATGTCTGATGTATTCTGGAAAACTCTCAGGGATGAAGGCTTTAGAGGTTTCTACAAGGGGCTCATTCCTAATCTCCTCAAAGTTGTGCCAGCTGCAAGCATTACTTATATGGTTTATGAAAACATGAAGAAGAGTCTAGATCTTGAGTAG 1503 0.4491 MSGAGQAIDMENVGFSKAKADHGRGKKAGPVSMDHVLLALRETKDERDLRIRSLFNFFDAANNGYLDYAHIEAGLSALQIPPEYKYAKELFKVCDADRDGRIDYHDFRRYMDDKELELYRIFQAIDVEHNGCILPEELWDALVRAGIEIDEVELARFVEHVDKDNNGIITFEEWRDFLLLYPHEATIENIYQHWERVCLVDIGEQAVIPEGIGKHVHRSRYFIAGGIAGAASRTATAPLDRLKVVLQIQTGRASIMPAVMKIWQRDGLLGFFRGNGLNVVKVAPESAIKFYAYEMLKNVIGDAQQGKKDIGTAGRLFAGGMAGAVAQIAIYPMDLVKTRLQTCASDGGRVPKLGTLTKDIWVHEGPRAFYRGLVPSLLGMIPYAGIDLTAYDTLKDLSKRYILYDSDPGPLVQLGCGTISGALGATCVYPLQVIRTRLQAQPINSTGAYKGMSDVFWKTLRDEGFRGFYKGLIPNLLKVVPAASITYMVYENMKKSLDLE 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g03190 500 Pfam Mitochondrial carrier protein 409 497 IPR018108 -
Phco4g03190 500 Pfam Mitochondrial carrier protein 309 398 IPR018108 -
Phco4g03190 500 Pfam Mitochondrial carrier protein 219 301 IPR018108 -
Phco4g03190 500 Pfam EF-hand domain pair 88 113 IPR002048 GO:0005509
Phco4g03190 500 Gene3D Mitochondrial carrier domain 213 498 IPR023395 -
Phco4g03190 500 Gene3D - 16 117 - -
Phco4g03190 500 SMART efh_1 117 145 IPR002048 GO:0005509
Phco4g03190 500 SMART efh_1 153 181 IPR002048 GO:0005509
Phco4g03190 500 SMART efh_1 86 114 IPR002048 GO:0005509
Phco4g03190 500 SMART efh_1 50 78 IPR002048 GO:0005509
Phco4g03190 500 Pfam EF-hand domain pair 117 176 IPR002048 GO:0005509
Phco4g03190 500 SUPERFAMILY Mitochondrial carrier 214 492 IPR023395 -
Phco4g03190 500 ProSitePatterns EF-hand calcium-binding domain. 162 174 IPR018247 -
Phco4g03190 500 ProSiteProfiles EF-hand calcium-binding domain profile. 82 117 IPR002048 GO:0005509
Phco4g03190 500 Gene3D - 129 204 - -
Phco4g03190 500 ProSiteProfiles EF-hand calcium-binding domain profile. 149 184 IPR002048 GO:0005509
Phco4g03190 500 ProSiteProfiles EF-hand calcium-binding domain profile. 118 148 IPR002048 GO:0005509
Phco4g03190 500 FunFam Calcium-binding mitochondrial carrier protein SCaMC-1 129 204 - -
Phco4g03190 500 ProSiteProfiles Solute carrier (Solcar) repeat profile. 310 397 IPR018108 -
Phco4g03190 500 SUPERFAMILY EF-hand 36 212 IPR011992 -
Phco4g03190 500 PANTHER SOLUTE CARRIER FAMILY 25 174 498 - -
Phco4g03190 500 ProSiteProfiles Solute carrier (Solcar) repeat profile. 408 496 IPR018108 -
Phco4g03190 500 ProSitePatterns EF-hand calcium-binding domain. 95 107 IPR018247 -
Phco4g03190 500 ProSiteProfiles Solute carrier (Solcar) repeat profile. 216 299 IPR018108 -
Phco4g03190 500 FunFam Mitochondrial substrate carrier family protein 212 498 - -
Phco4g03190 500 ProSiteProfiles EF-hand calcium-binding domain profile. 46 81 IPR002048 GO:0005509
Phco4g03190 500 FunFam Calcium-binding mitochondrial carrier protein SCaMC-2 isoform A 22 117 - -
Phco4g03190 500 PRINTS Mitochondrial carrier protein signature 274 294 IPR002067 GO:0055085
Phco4g03190 500 PRINTS Mitochondrial carrier protein signature 221 234 IPR002067 GO:0055085
Phco4g03190 500 PRINTS Mitochondrial carrier protein signature 234 248 IPR002067 GO:0055085
Phco4g03190 500 PRINTS Mitochondrial carrier protein signature 370 388 IPR002067 GO:0055085
Phco4g03190 500 PRINTS Mitochondrial carrier protein signature 417 439 IPR002067 GO:0055085
Phco4g03190 500 PRINTS Mitochondrial carrier protein signature 325 343 IPR002067 GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g03190 Phco-Chr4 52611632 52614359 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g03190 4 52611632 52614359 Phco7g01925 7 23721715 23724109 PCT