Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g03185 ATGGCGTCAACAGCGACTGCGGCCACGGGATGGTACCGAGGAAAGGTGAAGGCGGTTCCGTCTGGGGATTGCGTGGTCATCATGGCCATGCCTTCCGGCAAGCCTGGTCCCTTGCCTGAAAAGTCCATCACGTTGTCATCTCTAATGGCTCCAAGACTGGCGCGTAGAGGTGGTGTGGATGAGCCGTTTGCTTGGGAAAGTAGAGAGTTTCTACGGAAGCTCTGCATAGGGAAGGAAGTGGCCTTCAGAGTTGATTACACTGTGCCATCGATAAGCCGTGACTTTGGCACAGTTTTTATAGGGGATAAGAATGTTGCTGTGCGGGTTGTTTCTGCAGGATGGGCAAAGGTAAGAGAGCAGGGGCAACAGAAGGGAGAGGTAAGTCCTTACCTAGCTGAATTGTTACGATCGGAAGAACAAGCCAAACAGGAAGGCTTTGGTCGTTGGAGTAAGGTTCCTGGTGCTGCTGAGGCATCCATCAGAAATCTACCACCATCAGCACTTGGTGACTCTAGCAACTTAGATGCTATGGGTTTATTAGCTTCTAACAAAGGCAGGCCCATGGAAGGACTTGTTGAGCAGGTTCGCGATGGAAGTACCCTGCGTGTCTATTTGCTCCCAGATTTTCAGTTTGTCCAAGTTTTTGTCGCTGGAATTCAGGCCCCACAAATGGGAAGGAGAACTGTCGCTGAAAGTGTTGTTGAACCAGAGGTGCCAGCTGATGAGACTAATGGAGACGTTCCTGGGGAACCTCGAGCCCCACTCACATCTGCCCAAAGACTTGCAGCCTCAGCAGCAACTGCTGAAACTTCAGCAGATCCTTTTGCACCTGAAGCTAAATTCTTCACTGAGACAAGAGTATTGAATCGAGATGTTCGAATTGTTCTGGAAGGTGTTGATAAGTTCAGCAATTTGATTGGATCAGTCTATTATCCTGATGGTGACTCAGCAAAAGATTTGGCATTGGAGCTTGTGGAAAATGGTTTTGCCAAATATGTTGAGTGGAGTGCAAATATGATGGAAGAAGAAGCAAAGAGGAAGCTGAAGACTTCAGAGCTTCAGGCAAAGAAAAACAGGTTAAGAATGTGGACAAATTATGTACCACCAGCAACAAATTCAAAAGCCATACATGACCAGAATTTTACAGGAAAGGTGGTTGAGGTTGTTAGTGGAGATTGTATCATTGTTGCCGATGATTCAATTCCGTATGCCAGTCCACTAGCAGAGCGGCGAGTCAACCTTTCAAGTATTAGGTGCCCAAAAATGGGCAATCCTCGTAGGGATGAAAAACCAGCACCGTATGCTCGTGAGGCAAAGGAGTTCTTGAGAACACGCCTCATTGGTCGTCAAGTAAATGTTCAAATGGAGTATTCTAGAAAGGTTGGTCCAGCTGATGGATCTTCTGTTGCATCAGGAGCTCCTGAAGGCAGAGCAATGGATTTTGGATCGGTATTCCTACTCAACGCTGTTAAGGCCGATGGTGATGATGTCCCTTCATCTGTTTCATCTGCTGGTAGTCAGCAGAATGGGGTGAATATTGCTGAGTTGATTGTTGGCCGTGGTTTTGGAACTGTCATCAGACATCGTGACTTTGAAGAGAGATCAAATTATTATGATGCTCTTCTTACTGCTGAATCACGTGCTATTTCTGGAAGGAAAGGGGTCCATTCTGCCAAGGATTCTCCAGCCATGCATATAACTGACTTGACCATAGCATCAGCAAAGAAAGCCAAAGATTTCTTGCCTTTCCTTCACCGCAGCAGAAAAATTCCTGCTGTTGTGGAATATGTCCTCAGTGGTCATCGTTTTAAATTGTTAATTCCAAAAGAAACTTGCAGTATTGCATTTGCATTTTCTGGTGTCAGATGTCCTGGTCGCAATGAGCCTTATTCTGATGAAGCCATCTCTTTCATGAGGCGTAAAATAATGCAGAGAGATGTTGAGATTGAGGTTGAGACCGTTGATAGAACTGGCACTTTCTTGGGTTCCTTATGGGAGTCAAAGACCAATGTGGCGATTACACTGCTTGAAACTGGTTTTGCAAAGCTTCAAACTTCCTTTGGCAGTGACAGGATTCCTGATTTTCATCTTCTGGAGCGAGCTGAGCAATCTGCCAGGAGCCAAAAGCTGAAAATTTGGGAGAATTATGTTGAAGGGGAGGAAGTATCTAATGGTGCACCTGTTGAGAACAAACAGCAAGAAGTGCTCAAGGTGACGGTAACAGAAGTCTTGGGTGGGGGTAAATTCTATGTCAATCCTGTTGGGGATCAAAAGTTAGCATCCATTCAGCAACAACTTTCTTTTCTGAACCTTCAAGAAGCTCCTCTGATTGGAGCTTTCAATCCTAAGAAGGGTGACATAGTCCTTTGTCTTTTTGGTGCTGATAAATCTTGGTATCGGGCAATGATAGTCAATGGACCTCGAGGACCTGTTGCATCTCCAAATGACATGTTTGAAGTATTTTATATTGATTATGGAAATCAAGAAGAAGTACCTTACTCTCAGCTACGGCCTCTTGATCCATCCGTGTCTGCTGCCCCTGGCCTTGCACAATTGTGCAGCCTTGCATATGTGAAGGTTCCAAACTTGGAAGAGGATTTTGGCCAAGAAGCAGCTGAATATTTGAGTGAACTCACTTTAAACAGTGGCAAAGAGTTCAGGGCTAAAGTTGAGGAGAGAGATACATCGGGAGGAAAAGCCAAAGGGCAGGGTACTGGTACCGTGCTTGCCGTAACGCTAGTTGCTGTGGATTCTGAGATCAGTGTTAATGCTGCCATTCTACAGGAAGGACTTGGTAGGCTAGAAAAAAGAAACAGGTGGGACAGAAAAGAAAAACAGCAGGCTTTTGATAATCTGGAGACATTCCAGGGAGAAGCTCGGACCAGTCGGCGTGGAATGTGGCAGTATGGAGATATCCAGTCGGATGATGAGGACACTGCTCCTCCTGCTAGAAAGGCTGGTGGCCGGAAGTGA 2973 0.4598 MASTATAATGWYRGKVKAVPSGDCVVIMAMPSGKPGPLPEKSITLSSLMAPRLARRGGVDEPFAWESREFLRKLCIGKEVAFRVDYTVPSISRDFGTVFIGDKNVAVRVVSAGWAKVREQGQQKGEVSPYLAELLRSEEQAKQEGFGRWSKVPGAAEASIRNLPPSALGDSSNLDAMGLLASNKGRPMEGLVEQVRDGSTLRVYLLPDFQFVQVFVAGIQAPQMGRRTVAESVVEPEVPADETNGDVPGEPRAPLTSAQRLAASAATAETSADPFAPEAKFFTETRVLNRDVRIVLEGVDKFSNLIGSVYYPDGDSAKDLALELVENGFAKYVEWSANMMEEEAKRKLKTSELQAKKNRLRMWTNYVPPATNSKAIHDQNFTGKVVEVVSGDCIIVADDSIPYASPLAERRVNLSSIRCPKMGNPRRDEKPAPYAREAKEFLRTRLIGRQVNVQMEYSRKVGPADGSSVASGAPEGRAMDFGSVFLLNAVKADGDDVPSSVSSAGSQQNGVNIAELIVGRGFGTVIRHRDFEERSNYYDALLTAESRAISGRKGVHSAKDSPAMHITDLTIASAKKAKDFLPFLHRSRKIPAVVEYVLSGHRFKLLIPKETCSIAFAFSGVRCPGRNEPYSDEAISFMRRKIMQRDVEIEVETVDRTGTFLGSLWESKTNVAITLLETGFAKLQTSFGSDRIPDFHLLERAEQSARSQKLKIWENYVEGEEVSNGAPVENKQQEVLKVTVTEVLGGGKFYVNPVGDQKLASIQQQLSFLNLQEAPLIGAFNPKKGDIVLCLFGADKSWYRAMIVNGPRGPVASPNDMFEVFYIDYGNQEEVPYSQLRPLDPSVSAAPGLAQLCSLAYVKVPNLEEDFGQEAAEYLSELTLNSGKEFRAKVEERDTSGGKAKGQGTGTVLAVTLVAVDSEISVNAAILQEGLGRLEKRNRWDRKEKQQAFDNLETFQGEARTSRRGMWQYGDIQSDDEDTAPPARKAGGRK 990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g03185 990 SMART SNASE_2 186 365 IPR016071 -
Phco4g03185 990 SMART SNASE_2 588 715 IPR016071 -
Phco4g03185 990 SMART SNASE_2 10 151 IPR016071 -
Phco4g03185 990 SMART SNASE_2 379 558 IPR016071 -
Phco4g03185 990 SUPERFAMILY Staphylococcal nuclease 182 369 IPR035437 -
Phco4g03185 990 Gene3D - 738 970 IPR035437 -
Phco4g03185 990 Pfam Staphylococcal nuclease homologue 618 715 IPR016071 -
Phco4g03185 990 Pfam Staphylococcal nuclease homologue 269 364 IPR016071 -
Phco4g03185 990 Pfam Staphylococcal nuclease homologue 43 151 IPR016071 -
Phco4g03185 990 Pfam Staphylococcal nuclease homologue 860 968 IPR016071 -
Phco4g03185 990 SUPERFAMILY Staphylococcal nuclease 820 975 IPR035437 -
Phco4g03185 990 FunFam Ribonuclease 10 156 - -
Phco4g03185 990 MobiDBLite consensus disorder prediction 952 990 - -
Phco4g03185 990 FunFam Ribonuclease 849 970 - -
Phco4g03185 990 PIRSF RISC-Tudor-SN 1 981 IPR016685 GO:0016442|GO:0031047
Phco4g03185 990 FunFam Ribonuclease 377 566 - -
Phco4g03185 990 Pfam Tudor domain 733 856 IPR002999 -
Phco4g03185 990 PANTHER EBNA2 BINDING PROTEIN P100 52 970 - -
Phco4g03185 990 SUPERFAMILY Tudor/PWWP/MBT 774 858 - -
Phco4g03185 990 SUPERFAMILY Staphylococcal nuclease 7 151 IPR035437 -
Phco4g03185 990 ProSiteProfiles Thermonuclease domain profile. 186 365 IPR016071 -
Phco4g03185 990 FunFam Serine/threonine-protein kinase 31 754 850 - -
Phco4g03185 990 SUPERFAMILY Staphylococcal nuclease 376 561 IPR035437 -
Phco4g03185 990 Gene3D - 754 850 - -
Phco4g03185 990 Gene3D - 570 713 IPR035437 -
Phco4g03185 990 ProSiteProfiles Tudor domain profile. 781 846 IPR002999 -
Phco4g03185 990 FunFam Ribonuclease 569 713 - -
Phco4g03185 990 Gene3D - 377 566 IPR035437 -
Phco4g03185 990 Gene3D - 10 155 IPR035437 -
Phco4g03185 990 SMART TUDOR_7 780 844 IPR002999 -
Phco4g03185 990 CDD Tudor_AtTudor1-like 746 861 IPR047395 -
Phco4g03185 990 Gene3D - 178 375 IPR035437 -
Phco4g03185 990 SUPERFAMILY Staphylococcal nuclease 582 716 IPR035437 -
Phco4g03185 990 ProSiteProfiles Thermonuclease domain profile. 379 558 IPR016071 -
Phco4g03185 990 ProSiteProfiles Thermonuclease domain profile. 588 715 IPR016071 -
Phco4g03185 990 ProSiteProfiles Thermonuclease domain profile. 10 151 IPR016071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g03185 Phco-Chr4 52576030 52581523 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g03185 4 52576030 52581523 Phco7g01924 7 23691749 23698227 PCT