Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g01895 ATGGGAAACTGCTTCTCCGAAGTCACCGCAGGCCGCGCCGCCATCGGCGGCACCGCCGGAGATTTTCGCAGTCTTGCCGGCGCTCCAAACGACGCCGTCGAGAACTTCCTCAGGTCTCGCGGCCACCACGGTCTCTTTTCTCAGATCGAGTTGTCGTTTTCCGCTTCTGGCTTGAGTGATCGTGATGTGCTTTTCAAGAATAATCCGATGATGGTTCTTTATGCAAAAGGAAAAAATGGAGCACTTGAGGAAATTTGCCGTACAGAAGTAGTTCTGAATTCATCAAGTCCAACATGGATTACTAAACACACCCTCATTTATCATTTTGAGGTTGTTCAGGTTTTAGTGTTTCGTGTGTATGATGTTGATACTCAGTTTCACAATCTAGATATAAAGATGCTTGAGCTAGATGAGCAGCAATTTCTTGGTGAGGCTACATGTGTACTATCCCAGATAATCACACAGCGTGATCAATCACTGACTATAGATCTACACACAGAAGATTCTTTGAGATCTACCCTTCCCAAAAACTGCGGGAAGCTCCTGGTGCATGCTGAGGAATGTGTTAGCTCAAAGACTGCAATAGAGATGGCGTTCAGGTGCTCAGATTTGGAATGCAAGGATCTCTTCTCAAGAAATGACCCCTTTTTATTGATATCAAAAGTTGTAGAAGGTGGTGTCCAAATTCCAATTTGCAAAACAGAAGTTATAAAGAATGATCTCAACCCAATATGGAAATCTGTGTTTGTGAATATTCAACAAGTAGGAAGCAAGGAGAGTATGTTGATAATAGAGTGCTATAACTTTAATAGCAATGGAAAACATGATTTAATTGGAAAAGTGGAGAAATCTCTCGCTGAGTTTGAGAACATTCATAATACTGGACAAGGAGAAAATTTATGTTTGCCGTCTTCTGGTGGACAAAACCATGATAATAAGGTGTTAAGGAGCCAACTATTTGTGGACAAATTTATTGAAAGTGTCCAATATACTTTCTTGGATTACTTGGCGGGGGGGTTTGAATTGAACTTCATGGTGGCTGTTGACTTTACAGCTTCAAATGGAAATCCACGCCTTCCTGATTCTTTGCATTATATTGATCCTTCAGGGCGGCCAAATGCATACCAGAGGGCAATTGTTGAGGTTGGGGAAGTGTTACAGTTTTATGATTCAGACAAACGATTTCCTACTTGGGGATTTGGGGCACGACCAATTGATGGTCCTGTTTCTCATTGCTTCAACTTGAATGGAAGTAGTCATTATTGTGAGGTGGAAGGGATCCAAGGAATTATGATGGCTTACACAAGTGCCCTGCATAATGTATCCCTTGCAGGACCTACTCTTTTTGGACCTGTCATAAGCACTGCTGCACTGATTGCCAGCCAATCTGTAGCAAATGGTGGAAGAAAGTACTTTGTTTTGTTAATAATCACAGATGGAGTAGTGACAGATCTTCAAGAAACAAAAGAGGCCATTGTTAAAGCATCTGATCTGCCATTATCAATCCTCATTGTTGGGGTAGGAGGTGCTGATTTTAAAGAAATGGAGGTTTTAGATGCAGACAAGGGAGAGAGGCTTGAAAGTTCATATGGACGCGTTGCTTCACGTGATATCGTCCAATTTGTTCCATTTCGGGAGGTTCAAAGTGGATTTTCAGTTGTTCAAGCACTTCTAGCAGAATTACCGACTCAATTTTTAACCTACGTGCGGAGCAGAAATATCCAACCAAGCCTCTAG 1737 0.4214 MGNCFSEVTAGRAAIGGTAGDFRSLAGAPNDAVENFLRSRGHHGLFSQIELSFSASGLSDRDVLFKNNPMMVLYAKGKNGALEEICRTEVVLNSSSPTWITKHTLIYHFEVVQVLVFRVYDVDTQFHNLDIKMLELDEQQFLGEATCVLSQIITQRDQSLTIDLHTEDSLRSTLPKNCGKLLVHAEECVSSKTAIEMAFRCSDLECKDLFSRNDPFLLISKVVEGGVQIPICKTEVIKNDLNPIWKSVFVNIQQVGSKESMLIIECYNFNSNGKHDLIGKVEKSLAEFENIHNTGQGENLCLPSSGGQNHDNKVLRSQLFVDKFIESVQYTFLDYLAGGFELNFMVAVDFTASNGNPRLPDSLHYIDPSGRPNAYQRAIVEVGEVLQFYDSDKRFPTWGFGARPIDGPVSHCFNLNGSSHYCEVEGIQGIMMAYTSALHNVSLAGPTLFGPVISTAALIASQSVANGGRKYFVLLIITDGVVTDLQETKEAIVKASDLPLSILIVGVGGADFKEMEVLDADKGERLESSYGRVASRDIVQFVPFREVQSGFSVVQALLAELPTQFLTYVRSRNIQPSL 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g01895 578 ProSiteProfiles C2 domain profile. 28 162 IPR000008 -
Phco7g01895 578 Pfam Copine 362 576 IPR010734 -
Phco7g01895 578 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 54 165 IPR035892 -
Phco7g01895 578 FunFam Protein BONZAI 1 51 194 - -
Phco7g01895 578 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 176 288 IPR035892 -
Phco7g01895 578 FunFam Protein BONZAI 1 isoform A 195 314 - -
Phco7g01895 578 CDD vWA_copine_like 312 565 IPR010734 -
Phco7g01895 578 SUPERFAMILY vWA-like 342 524 IPR036465 -
Phco7g01895 578 SMART VWA_4 341 538 IPR002035 -
Phco7g01895 578 Gene3D C2 domain 196 312 IPR035892 -
Phco7g01895 578 SMART C2_3c 48 161 IPR000008 -
Phco7g01895 578 SMART C2_3c 198 297 IPR000008 -
Phco7g01895 578 ProSiteProfiles C2 domain profile. 177 302 IPR000008 -
Phco7g01895 578 PANTHER COPINE 34 577 IPR045052 GO:0005544
Phco7g01895 578 CDD C2A_Copine 47 172 - -
Phco7g01895 578 Gene3D C2 domain 52 195 IPR035892 -
Phco7g01895 578 ProSiteProfiles VWFA domain profile. 343 557 IPR002035 -
Phco7g01895 578 CDD C2B_Copine 195 287 IPR037768 -
Phco7g01895 578 Pfam C2 domain 200 290 IPR000008 -
Phco7g01895 578 Pfam C2 domain 54 159 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g01895 Phco-Chr7 22559899 22570035 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g01895 7 22559899 22570035 Phco7g01895 7 22559899 22570035 ECH
Phco4g03197 4 52680721 52691011 Phco7g01895 7 22559899 22570035 PCT