Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g03197 ATGGGCAATTGCTGCTCCGACGTCCCCGGCGGCAAAATGGCCGTTGGTGGCACCGCCTCCGACCATTTCAACTCGGCCGGTCCCAACGACGCCGTCGATAACTTCTTCAGGTCTCGCGGCTATAACGGCCTCTTCTCTCAGATCGAGTTGTCGTTTTCTGCTTCTGGCTTGCGTGATCGGGATATAATCTCTAAGAGTGATCCAATGTTGGTTCTTTATGAAAAAGGAAGAAATGGAGCACTCAAGGAACTTGGTCGGACAGAAGTCATTCTGAATTCATTAAATCCTACATGGATTACTAAACACACTCTCACTTATCATTTTGAGACTGTTCAGAATTTAGTGTTTCGTGTGTATGATGTCGATACTCAGTTTCACAATGCAAGTGTAAAGATGCTTAAGCTAGAAGAGCAGGAACATCTAGGTGAGGCAACCTGTGCATTATCTGAGATAATAACAAAGTTTGATCGATCAATGGCATTAGATTTACACGCAGAAGATTTTACCAGATCTACCCAGTCCCGAAACTGTGGAAAGCTCTTGGTGCACGCTGAGGAATGTGTTAGCTCAAAGACAACAGTGGAGATGACACTCAGGAGTTCTGATTTGGAATATAGGGATCTCTTCTCAAGAAGTGATCCCTTTTTATTGATATCAAAAGTTGTGGAAGGTGGTAGTCATATTCCAATTTGCAAAACAGAAGTTATAAAGAACAATCTCAACCCAATATGGAAGCCAGTGTTCATGAATATTCAACAAATAGGAAGCAAGGAAAATCCTTTGACACTGGAGTGCTATAATTTTAATAGCAATGGGAAACATGATTTGATGGGAAAAATGCAGAAATCTTTGATGGAGCTGGAGAAGCTTTTTTCCAGTGGTCAAGGAGGAAATTTTAGTCTGTCTACTACAGCGGGTCATAATCCTCATAACAAGATGTTAAAGGGCAGGTTATACGTTGACAAATATGTTGAAAGTGTCCAATATTCCTTCTTGGATTACTTGGCTGGGGGGTTTGAATTGAACTTCATGGTGGCTGTTGATTTTACAGCTTCAAATGGAAATCCACGCCTTCCAGATTCTTTGCATTATATTGATCCTTCAGGACGGCCAAATGCATACCAGAGGGCAATTTCAGAAGTTGGGGAGGTCTTGCAGTATTATGATTCAGATAAGCGATTTCCTACATGGGGATTTGGAGCACGACCAATTGATGGTCCTGTCTCCCATTGTTTCAACTTGAATGGAAGCAGCCATTACTGTGAGGTGGAAGGCATCCAAGGAATCATGAAGGCATACACAAGTGCCCTGCTTAACGTTTCCCTTGCAGGACCAACTCTTTTTGGACCTGTCATAAGCAATGCTGCACTGATTGCAAGCCAATCTGTAGCAAATGGCGGAAGAAAGTACTTTGTTTTGTTAATCATCACAGATGGAGTAGTGACAGATCTCCAAGAAACAAAAGATGCTCTCGTTAAAGCATCGGATCTACCATTGTCAATCCTTATTGTTGGTGTTGGAGGAGCCGATTTCAAAGAAATGGAGATTTTAGATGCGGACAAAGGAGAGAGGCTTGAAAGTTCATCTGGTCGCGTTGCTTCACGTGATATAGTCCAGTTTGTTCCATTTCGTGACGTTCAGAGTGGAGAAATTTCAGTAGTTCAAGCACTTCTAGCTGAATTACCTACTCAGTTTTTAACTTACATGCGGAGCAGAAGTATCCAACCGAATGTCTAG 1737 0.4237 MGNCCSDVPGGKMAVGGTASDHFNSAGPNDAVDNFFRSRGYNGLFSQIELSFSASGLRDRDIISKSDPMLVLYEKGRNGALKELGRTEVILNSLNPTWITKHTLTYHFETVQNLVFRVYDVDTQFHNASVKMLKLEEQEHLGEATCALSEIITKFDRSMALDLHAEDFTRSTQSRNCGKLLVHAEECVSSKTTVEMTLRSSDLEYRDLFSRSDPFLLISKVVEGGSHIPICKTEVIKNNLNPIWKPVFMNIQQIGSKENPLTLECYNFNSNGKHDLMGKMQKSLMELEKLFSSGQGGNFSLSTTAGHNPHNKMLKGRLYVDKYVESVQYSFLDYLAGGFELNFMVAVDFTASNGNPRLPDSLHYIDPSGRPNAYQRAISEVGEVLQYYDSDKRFPTWGFGARPIDGPVSHCFNLNGSSHYCEVEGIQGIMKAYTSALLNVSLAGPTLFGPVISNAALIASQSVANGGRKYFVLLIITDGVVTDLQETKDALVKASDLPLSILIVGVGGADFKEMEILDADKGERLESSSGRVASRDIVQFVPFRDVQSGEISVVQALLAELPTQFLTYMRSRSIQPNV 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g03197 578 SMART C2_3c 197 296 IPR000008 -
Phco4g03197 578 SMART C2_3c 47 160 IPR000008 -
Phco4g03197 578 Pfam Copine 361 576 IPR010734 -
Phco4g03197 578 CDD C2B_Copine 194 289 IPR037768 -
Phco4g03197 578 SMART VWA_4 340 537 IPR002035 -
Phco4g03197 578 FunFam Protein BONZAI 1 50 193 - -
Phco4g03197 578 Gene3D C2 domain 51 197 IPR035892 -
Phco4g03197 578 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 199 290 IPR035892 -
Phco4g03197 578 ProSiteProfiles VWFA domain profile. 342 561 IPR002035 -
Phco4g03197 578 PANTHER COPINE 32 577 IPR045052 GO:0005544
Phco4g03197 578 Gene3D C2 domain 198 321 IPR035892 -
Phco4g03197 578 ProSiteProfiles C2 domain profile. 27 163 IPR000008 -
Phco4g03197 578 FunFam Protein BONZAI 2 194 326 - -
Phco4g03197 578 Pfam C2 domain 199 287 IPR000008 -
Phco4g03197 578 Pfam C2 domain 53 151 IPR000008 -
Phco4g03197 578 CDD vWA_copine_like 311 565 IPR010734 -
Phco4g03197 578 ProSiteProfiles C2 domain profile. 176 301 IPR000008 -
Phco4g03197 578 CDD C2A_Copine 46 163 - -
Phco4g03197 578 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 52 159 IPR035892 -
Phco4g03197 578 SUPERFAMILY vWA-like 340 524 IPR036465 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g03197 Phco-Chr4 52680721 52691011 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g03197 4 52680721 52691011 Phco7g01895 7 22559899 22570035 PCT