Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g01892 ATGCACAGAGTTTCATCTGATATAAAAGAGAGAGAGCGACCGCCGGCGAGCCTCACTCGCCGGAAATTCGCTCTTCCTCGCCGGCGTTTTCTGGAACCTTCATTTCTCCCATTGCTCCTTGGAATTGTGGTTATTTTTTCTGCGGCTCCATTTGAAGTTCTGCGTAATTATTCATCGCTTTGCCTTGTCCGAGCGTCTCAGATTGCAATGCAGAGGGAAGGAGATTATGGCTTCTCTGAAATTTTGGTTTTTTCTCTTGATCTGTTAATGTTTGAGGCTTTCGCTGTGAAATTCCTTCTCCATCTGTGTAATTTTATGGCAGAATCGGCTGAGTACTGGTGGAAGGGGGTGGTGATGTTGAGCCTAACGAGGCTAGCAAGGGAGGAGGCTTTCAGTATTTTCTGGACCAGCTACAGGATGCCTTCTGAAATAATGGAGAAGAGGGGTGTGTCTGCCTCATCCCACTTTTTGGATGACATTTCCTATGCTTCTGAGAAAAATATTGGATTACGGAAGCCAAAATCTATTCATGACCATTTTCTACAGGGCAAGAGTGAAATGGCGGCATCACCTGGCTGTATTTTGAATACTTCATCGCCCCATGCAACAAATGCAAAATCTGGTTTGCCAATGTCTCATACTACTCTATCTGGGGAAATTACAGAAGACCTACATTTTGGCAGAGAAGCAGGCACTATAGAGATGCTGAAGGATTCCAAGGAATCATTTAATTATAGTAAGAGGTCATGGTCTAATGTGCATAGGCAGCCAGCATCTAGCTCATATGGTCTAATTGGGAGCAAGATTGTCCCCAGTGCTGCCTCATGTGAAAGTAGTCTATTTTCAAGCTCGCTGTCTGAGATGTTTAGCCAAAAGTTGAGGTTATTGGGGAATGGAGTGCTGTCTGGTCAACCCATTACTGTTGGTTCCCTTCCTGAGGAAGAACCGTATAAATCTCTAGGAGAAATTGAGGCTGACACTATTGGAAATCTCCTTCCTGATGAAGATGACCTGTTTTCTGGAGTCACTGACGAGTTAGGATGCAGTTCTCGTGCTAGAATGAATGATGATTTTGAAGATTTTGATTTGTTCAGCAGCAGTGGAGGCATGGAATTGGAAGGAGATGAACATCTAATTTCTGGAAATGGAACCAGTTTCGTGGATGAAGATCCTGATTACTTTGGAGTTTCTAAAGGAAAAATTCCATTCGGTGAACAATCTTCTAGAACACTTTTTGTTAGAAATATCAATAGCAATGTTGAAGACTCTGAACTTAAGGCTCTCTTTGAGCAATATGGAGATATCCGAACTATTTACACCGCCTGCAAGCATCGTGGGTTTGTTATGATTTCATATTATGATCTAAGGGCAGCACAAAATGCAATGAAGGCACTTCAAAATAGGTCATTGAGATCTAGGAAACTGGATATACATTATTCAATTCCAAAGGGCAATGCTCCAGAGAAAGATATTGGTCATGGTACACTGATGATATCTGATCTTGATTCATCTGTTTTGAAAGATGAAATTAAACAGATTTTTGGGTTTTATGGAGAAATTAGAGATATCTATGAATATCCGCAATTGAATCATGTCAAATTTATCGAATTTTATGATGTTCGAGCTGCAGAAGCTTCTCTTCGTGCATTGAATGGGATCTGCTTTTCTGGGAAGCACATTAAGCTTGAGCCCAGCCTTCCCATGATAGCAACATGTATGATGCACCAGTCTCAGAAGGGACAAGATGAACCAGATCTTGGTCATAGTCTTAGTGACAACATTTCCTTAAGACATAATGCAGGAGTGTCATCTGGATTTATTGCATCTGCTGGCAGCTTGGAAAACGGGTATAATCAAGGATTTCGTTCTGCAACACGGCAACCTACTTTCATTGATAAATCACTATTTAATATGAATTCTAACATTCACAAGACCGCTAGAGGGGCATCTAATGGAAAAATATCTGGTGTTTTTGAGGCCAGTAACACTATTGAGGCAATGAAATTTGCATCCGTTTCGAGGTTCCATCCTCATTCTTTACCAGAATATCGCGATAGCTTAGCTAATGGCAGTCCTTACAACTTTTCAAGTACCATTAGCATGGCTGCCAATATTGGAAAAGGATCAACGGAATCATCTGACAGCAGGCACATTCAGGGAATAAACTCAACTGGGAACCTAGCAGAGTTTAATACAGGAGGAAATGGAAACCGCCCCAATCATGGACTTTATCATATGTGGAATGGCTCCAACTTGCATCAACAACCTCCATCAAATGCCATGCTTTGGCAGAAAACACCGTCCTTTGTTAATGGTGCTGGTTCTCCATGTCTTCCACAGATACCCAGCTTTCCTAGAACACCTCCCCATGTGCTTAGAGCATCACATATAGACCATCAAGTGGGATCAGCACCAGTTGTTACTGCCTCGCCCTGGGAAAGACAACATTCTTACTTGGGAGAGTCGCCTGATGGTTCTGGTTTTAGATTGGGTTCTGTTGGAAGTCCTGGCTTTCATGGTAGCTGGCAGATGCATCCTCCTGCTTCTCACAACATATTTTCTCATGTCAGTGGGAATGGTACAGAATTGACATCAAATGCTGGTCAGGGCTCTCCTAAGCAGTTATCACATGTTTTAACTGGGAGACTTCCCATGAATTTGGTTTCTAAATTTGATTCTACCAATGAACGTATGAGAAACCTCTATCCTCGAAGAAGCGAACCAAACACTAACAGCAATGCAGATAAAAAACAGTATGAACTTGACCTAGGCCGCATATTGCGTGGGGATGACAACCGAACAACGCTCATGATAAAAAATATTCCGAATAAGTACACTTCAAAGATGCTTCTTGCTGCCATTGATGAACAATGTCGAGGAACATATGATTTTCTGTATTTGCCAATTGATTTCAAGAACAAATGTAATGTTGGCTATGCATTCATCAATATGATTGATCCTTGTCAAATTATTCCATTCCACAAGGCCTTTAACGGGAAAAAATGGGAGAAGTTCAACAGTGAAAAGGTGGCAGTACTCGCATATGCCCGAATTCAAGGAAAAGCTGCTCTTATTGCTCATTTTCAGAATTCAAGCCTGATGAATGAGGATAAACGTTGCCGCCCTATTCTTTTCCATACAGATGGCCCAAATGCTGGCGATCCGGAGCCTTTCCCCTTGGGTAACAACATTAGAGTGAGGCCTGGGAAATCTCGCGCAAATGGTAGTGAGGAGAATCGCAGCCAAGGGAATCCTTCATCTTTGGCAAGTGGAGAAGAGTCTGGGAATGGAATGGAATCATCTTCGATCTCTTCAAAAAACTCTGACTGA 3330 0.4216 MHRVSSDIKERERPPASLTRRKFALPRRRFLEPSFLPLLLGIVVIFSAAPFEVLRNYSSLCLVRASQIAMQREGDYGFSEILVFSLDLLMFEAFAVKFLLHLCNFMAESAEYWWKGVVMLSLTRLAREEAFSIFWTSYRMPSEIMEKRGVSASSHFLDDISYASEKNIGLRKPKSIHDHFLQGKSEMAASPGCILNTSSPHATNAKSGLPMSHTTLSGEITEDLHFGREAGTIEMLKDSKESFNYSKRSWSNVHRQPASSSYGLIGSKIVPSAASCESSLFSSSLSEMFSQKLRLLGNGVLSGQPITVGSLPEEEPYKSLGEIEADTIGNLLPDEDDLFSGVTDELGCSSRARMNDDFEDFDLFSSSGGMELEGDEHLISGNGTSFVDEDPDYFGVSKGKIPFGEQSSRTLFVRNINSNVEDSELKALFEQYGDIRTIYTACKHRGFVMISYYDLRAAQNAMKALQNRSLRSRKLDIHYSIPKGNAPEKDIGHGTLMISDLDSSVLKDEIKQIFGFYGEIRDIYEYPQLNHVKFIEFYDVRAAEASLRALNGICFSGKHIKLEPSLPMIATCMMHQSQKGQDEPDLGHSLSDNISLRHNAGVSSGFIASAGSLENGYNQGFRSATRQPTFIDKSLFNMNSNIHKTARGASNGKISGVFEASNTIEAMKFASVSRFHPHSLPEYRDSLANGSPYNFSSTISMAANIGKGSTESSDSRHIQGINSTGNLAEFNTGGNGNRPNHGLYHMWNGSNLHQQPPSNAMLWQKTPSFVNGAGSPCLPQIPSFPRTPPHVLRASHIDHQVGSAPVVTASPWERQHSYLGESPDGSGFRLGSVGSPGFHGSWQMHPPASHNIFSHVSGNGTELTSNAGQGSPKQLSHVLTGRLPMNLVSKFDSTNERMRNLYPRRSEPNTNSNADKKQYELDLGRILRGDDNRTTLMIKNIPNKYTSKMLLAAIDEQCRGTYDFLYLPIDFKNKCNVGYAFINMIDPCQIIPFHKAFNGKKWEKFNSEKVAVLAYARIQGKAALIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPLGNNIRVRPGKSRANGSEENRSQGNPSSLASGEESGNGMESSSISSKNSD 1109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g01892 1109 SUPERFAMILY RNA-binding domain, RBD 406 564 IPR035979 GO:0003676
Phco7g01892 1109 CDD RRM3_MEI2_like 936 1021 IPR034454 -
Phco7g01892 1109 FunFam MEI2-like protein 5 isoform 2 398 492 - -
Phco7g01892 1109 PANTHER RNA RECOGNITION MOTIF-CONTAINING 218 1104 - -
Phco7g01892 1109 SMART rrm1_1 410 478 IPR000504 GO:0003723
Phco7g01892 1109 SMART rrm1_1 495 563 IPR000504 GO:0003723
Phco7g01892 1109 SMART rrm1_1 935 1013 IPR000504 GO:0003723
Phco7g01892 1109 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 409 482 IPR000504 GO:0003723
Phco7g01892 1109 FunFam Protein MEI2-like 1 493 587 - -
Phco7g01892 1109 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 496 561 IPR000504 GO:0003723
Phco7g01892 1109 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 411 475 IPR000504 GO:0003723
Phco7g01892 1109 Gene3D - 403 491 IPR012677 -
Phco7g01892 1109 SUPERFAMILY RNA-binding domain, RBD 935 1020 IPR035979 GO:0003676
Phco7g01892 1109 MobiDBLite consensus disorder prediction 1044 1109 - -
Phco7g01892 1109 CDD RRM1_MEI2_like 408 483 IPR034453 -
Phco7g01892 1109 Gene3D - 492 586 IPR012677 -
Phco7g01892 1109 Pfam RNA recognition motif 2 933 1029 IPR007201 -
Phco7g01892 1109 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 494 567 IPR000504 GO:0003723
Phco7g01892 1109 MobiDBLite consensus disorder prediction 1075 1109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g01892 Phco-Chr7 22433759 22441884 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g01892 7 22433759 22441884 Phco7g01892 7 22433759 22441884 ECH
Phco4g03199 4 52702013 52708375 Phco7g01892 7 22433759 22441884 PCT