Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g03199 ATGCCTTTTCAAATCATGGATCACAGGGGCGTTTCTGCTTCATCCCACTTTTTCGAAGACGTTTCCTTTCGTTCTGAGAGGAATGTTGGACTACGGAAACCAATATCCATTAATGACCATTACCCACAAGGAAGCAATGGAATGGTAGCATCACCAGGCAGCATTTTGAACAGTACACCACCCCTTGATGTAAATGCAAAAGCTGGTTTGCTGATGTCCCAGGCTAGTCTACCTGGGAATAGTATAGATTCCAAGGAATCATTGAATTATTGTCCCAAATCATTGTCTGATGGATCTCTGCATTCGGCGCCTACCTCATATGGTTTAATTGGGAACAAGATTGTGACCAGTGCTGGCCCCTGTGAAAGTAGTTTATTCTCAAGCTCTATGTCTGAGATATTTAGCCGAAAGTTGCGGTTGTTTGGAAATGATGTTCAGTCTGATCAGTCTGTTACTGCTGGTTTTCCTGAGGAACCATTTAAATCTCTTAAAGAAATGGAGGCTGACACTATAGGGAATCTCCTTCCTGATGAAGATGATCTGTTTTCTGGTGTTGTTGACGAGTTAGGATGCAGTTCTCATGCCAAAACAAATGATGATTTTGAAGATTTTGATCTGTTTAGCAGTGGTGGAGGCATGGAGATGGAAGGAGACGAACATTTAAGTTCAGGAAAAATGATGAATGGTCTTGATGGAGATTATGGTTTCTTTGGAGGTTCTAAAGGAAAACTTCCTTTTGGTGAACAGCCTTCTAGGACACTTTTTGTTAGAAACATTAATAGCTATGTAGAAGACTCTGAGCTAAAAGATCTCTTTGAGCAATATGGAGATATCCGAACCATTTATACAGCCTGTAAGCATCGTGGGTTTGTCATGATTTCTTATCATGATCTAAGGGCAGCACAAAATGCAATGCAAGCACTTCAAAATAGGCCATTGAGGTCTAGGAAACTTGATATACATTATTCAATTCCTAAGGTCAATGCTCCAGAAAAGGATATTGGCCATGGTACACTGATGCTATCTGGTCTTGATTCATCTGTTTTAAATGATGAGCTTAAAAAGATTTTTGGATTTTATGGAGAAATTAAAGAAATCTATGAATATCCAGAAATGAAACATCACAAATTTATAGAGTTTTATGATGTCCGAGCCGCGGAATCTGCTCTTCGTGCTTTGAACAAGATGGACATTGCTGGGAAGCAGATCAAGCTTGAACCTGGCCATCCTAGTTTGATGCACCAGTCGCATAAGGGGCAAGATGAGCGAGATTTTGGTCAAAGTATCATGGACAATTTACCATTAAGACCAAAGGCAACAGGGTCTTCTGGAGTAATTGGATCTGGTTGCTTGGAAAATGGATATAATCAGAGGTTTCAATCTACAGTGCGACAACCTATTAATGCATTTATGGATAATGCATTCATTAATGTGAACTCTGGTATTCACAACACTGTGAGAGGGGCATCTGCTGGAAAAGTGTCTGGAGTTTGTGAGTCTAGTGGCTATGTTGATGCAATGAAATTTGCATCTAGTTCGAGATTTCATCCTCATTCCTTACCCGAGTATCATGATAGTTTAGCTAATGGTAGTCCTTATAACTTTTCTGGCACTATTAGCAACTTGGCTAACAATATAGGTGCTGGAGCTACAGAAGTCTCTGATGGCAGGCATATTCAGGGAATGGGCTCAACTGGGAACTTAGCAGAATTTAACGCAGGAGGAAATGGGATGCGCCCACATGGACTTTATCATATGTGGAACAGCTCCAATTTGCAACAGCAACCTTCATCGAGTAATGTGCTTTGGCAGAAATCACCATCATTTGTTAATGATGCTTGTTCCCCAAGCCTTCCACAGATGTCAAGCTTTGCTAGAACACCGCCTCATTTGCTGAGAACACCACATATGATGGACCACCATGTTGGATCAGCACCGGTTGTTACAGCCTCACCCTGGGAAAGGGCAAATTCTTATTTGGGAGGGTCCCCTGATGCTTCTGGTTTTCGCTTGGGTTCTCTAGGGAGTGGAGGTTTTCATGGTTCCTGGCAATTGCGTCCCCTGGATTTTCCTTCTCACAATGTGTTTTCTCATGTTGGTGGGAATGGCACTGAACTGACATCCAATGCTGGACAGAACTCTCCTAAGCAGTTGTCCCATGTTTTCCCTGCCAGACATCCTATGTCTTCAATGTCAAAATTTGATGCTACCAATGAACGAATGAGAAACCTTTATCACCGTAGAAATGAAGCAAGCACCAACAATGTTGATAAGAAGCAATACGAACTTGACCTAGGTCGTATATTGCGTGGGGAAGACAGCCGAACTACCCTTATGATAAAAAATATTCCCAACAAGTATACTTCAAAGATGCTTCTTGCTGCAATAGATGAGCAATGTAAGGGAACTTATGATTTTCTGTATTTACCGATTGATTTCAAGAACAAATGTAATGTTGGTTATGCATTCATAAACATGATTGATCCTGGTCAAATTATTCCTTTCCATCAGGCTTTTGATGGGAAAAAATGGGAGAAGTTTAATAGTGAAAAAGTAGCCTCACTGGCATATGCCCGAATTCAAGGAAAAGCTTCTCTCATTGCTCATTTCCAGAACTCGAGCCTGATGAACGAAGACAAGCGTTGCCGCCCTATTCTCTTCCATACTGATGGCCCAAATGCCGGTGATCCGGAACCTTTCCCCATGGGTGCCAATATTAGACTGCGAGCCGGAAAATCTCGCATTTCCGGCAGCGAGGAGATTCGAAGCCTAGGGAGTCCTTCAGCCTTGGCAAGTGGAGAAGAGTGTGGGGAGGGGATAGACTCTTCAAAAATCTAA 2838 0.42 MPFQIMDHRGVSASSHFFEDVSFRSERNVGLRKPISINDHYPQGSNGMVASPGSILNSTPPLDVNAKAGLLMSQASLPGNSIDSKESLNYCPKSLSDGSLHSAPTSYGLIGNKIVTSAGPCESSLFSSSMSEIFSRKLRLFGNDVQSDQSVTAGFPEEPFKSLKEMEADTIGNLLPDEDDLFSGVVDELGCSSHAKTNDDFEDFDLFSSGGGMEMEGDEHLSSGKMMNGLDGDYGFFGGSKGKLPFGEQPSRTLFVRNINSYVEDSELKDLFEQYGDIRTIYTACKHRGFVMISYHDLRAAQNAMQALQNRPLRSRKLDIHYSIPKVNAPEKDIGHGTLMLSGLDSSVLNDELKKIFGFYGEIKEIYEYPEMKHHKFIEFYDVRAAESALRALNKMDIAGKQIKLEPGHPSLMHQSHKGQDERDFGQSIMDNLPLRPKATGSSGVIGSGCLENGYNQRFQSTVRQPINAFMDNAFINVNSGIHNTVRGASAGKVSGVCESSGYVDAMKFASSSRFHPHSLPEYHDSLANGSPYNFSGTISNLANNIGAGATEVSDGRHIQGMGSTGNLAEFNAGGNGMRPHGLYHMWNSSNLQQQPSSSNVLWQKSPSFVNDACSPSLPQMSSFARTPPHLLRTPHMMDHHVGSAPVVTASPWERANSYLGGSPDASGFRLGSLGSGGFHGSWQLRPLDFPSHNVFSHVGGNGTELTSNAGQNSPKQLSHVFPARHPMSSMSKFDATNERMRNLYHRRNEASTNNVDKKQYELDLGRILRGEDSRTTLMIKNIPNKYTSKMLLAAIDEQCKGTYDFLYLPIDFKNKCNVGYAFINMIDPGQIIPFHQAFDGKKWEKFNSEKVASLAYARIQGKASLIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPMGANIRLRAGKSRISGSEEIRSLGSPSALASGEECGEGIDSSKI 945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g03199 945 Gene3D - 336 429 IPR012677 -
Phco4g03199 945 SUPERFAMILY RNA-binding domain, RBD 777 862 IPR035979 GO:0003676
Phco4g03199 945 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 337 410 IPR000504 GO:0003723
Phco4g03199 945 FunFam MEI2-like protein 5 isoform 2 241 335 - -
Phco4g03199 945 PANTHER RNA RECOGNITION MOTIF-CONTAINING 54 901 - -
Phco4g03199 945 CDD RRM1_MEI2_like 251 326 IPR034453 -
Phco4g03199 945 FunFam Protein MEI2-like 1 336 428 - -
Phco4g03199 945 SUPERFAMILY RNA-binding domain, RBD 249 408 IPR035979 GO:0003676
Phco4g03199 945 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 252 325 IPR000504 GO:0003723
Phco4g03199 945 Gene3D - 246 335 IPR012677 -
Phco4g03199 945 Pfam RNA recognition motif 2 775 871 IPR007201 -
Phco4g03199 945 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 339 404 IPR000504 GO:0003723
Phco4g03199 945 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 254 318 IPR000504 GO:0003723
Phco4g03199 945 CDD RRM3_MEI2_like 778 863 IPR034454 -
Phco4g03199 945 SMART rrm1_1 338 406 IPR000504 GO:0003723
Phco4g03199 945 SMART rrm1_1 777 853 IPR000504 GO:0003723
Phco4g03199 945 SMART rrm1_1 253 321 IPR000504 GO:0003723
Phco4g03199 945 MobiDBLite consensus disorder prediction 916 945 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g03199 Phco-Chr4 52702013 52708375 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g03199 4 52702013 52708375 Phco7g01892 7 22433759 22441884 PCT