Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g01888 ATGGATTTCTCAAAACTCAATGACTCGCCCATGTTCCGGCAACAGCTTCAGTGCATGGAAGAGAGTTCAGAATCGTTACGTTCGAGATGTTTCAAGTTCTACAAAGGATCAAGAAAGTACACGGAAGGGCTTGGAGATGCATATGATGGAGACATTGCATTTGCAAGTGCCCTTGAAAGTTTTGGAGGAGGGCATAATGATCCTCTATTTGTAACTTTAGGAGGACCAGTTATGACCAAATTTGCTATTGCATTGAGAGAAATCAGTACATATAAGGAAGTCCTTCGGTCACAGGCGGAGCACATGCTAAATGACCGGTTACTGAACATGCTAAACGTGGATATCCTAGATGTCAAGGAAGCTCGAAGGCGTTTTGAGAAAGCTTCCCTTGTATATGATCAGGCACGTGAGAAGTTTATGTCTCTGAGAAAAAGCACTAGGATTGATATTGCCACTGTCGTAGAAGAGGAATTGCACAACGCAAGAAGCTCATTTGAGGAATCTCGTTTCAATCTGGTCAGTGCTCTTCATAATGTTGAGGCCAAGAAGAGGTTTGAGTTTTTGGAGGCTGTCACTGGAGTTATGGATGCTCATCTTCGATATTATCGACAGGGATATCAGCTATTACATGAGCTCGAGCCTTTTATTATCGAGGTTTTGGCTTATACACAAAAGGCAAGAGAAAGTTACAATGATGAGCAGATTAGTCTTTGTGAAAGAATGTTGGAGTACAAAAAACATGTTCATCATGAAAGTATGTTGTCCTTGAATGGCCCTTACGTTTCTCCAGGTAGAGATGGGAATCCTGTGCAGCCTTTTTCAAGGATATCAAATAAAGTGGCAGATGCTGTAACAGAGTCTGCTGAAAATGGAAAGATTCAAATCATTCGGCAAGGATATCTCTCTAAACGATCCTCAAATTTGAGGGGTGATTGGAAGAGAAGGTACTTTGTTCTTGATAGTCGTGGAATGCTTTACTACTTTCGTAAACCATGGAATGGATTACATAGTAGCAATCCATCATCCGTACACAGAAACTGTGCCACTGATAATAGTGCTGGAATTTTGAGTCGCTTGCTTTCTTCACATTACCATGGAGTTATGCCTGATGAAAAATCTGTAGCACGTCACACAGTGAACCTGCTCACATCAACAATCAAGTCTGATGCTGAACAGTCAGATTTAAGGTTCTGCTTCAGGATTATTTCACCGTCAAAGAGTTACACATTGCAGGCAGAAAATGCTGTGGATCAGATGGATTGGATGGAAAAGATAACTGGTGTAATTGCCTCCTTATTGAGTGCACAGACACTGTCAGATGCGTCAGAAAATGGTAACGGTCAGTCTGTCAACAAGCTTCTTTTGTTAAAAGGTTGTCCAGATGATGATCAAGCATTGAGTGGGGATTCTATGTCATCCGAAGACTTGCAGAAGAATAAGCAAAGTACAAAAAGTGAAAAGCCAATTGAAATTCTTAGAAAAGTTAGTGGCAATGACAAATGTGCTGATTGTGATAAACCTGATCCAGACTGGGCATCCTTAAACCTTGGCATTCTCATATGCATTGAATGTTCCGGTGTCCACCGGAATCTTGGTGTACATGTATCAAAAGTAAGATCACTGACCCTTGATGTAAAAGTATGGGATTCAGCTGTCTTGAGCATGCTTCAGTCACTGGGGAATCACTTTGCAAACTCAGTTTGGGAGGAACTGTTGCACTCATCATGTACTTCACAAACAGATGAGAGTCCTGATGGATCATCCAAGCCACAGAAAAAGTTATTTCATGCAAGAAAACCATCACATGATGATCCTATTTCACTAAAGGAGAGGTTCATTCATGCAAAGTATGATGCAAAAGTCTTTGTTAGCCGGATAAAGAACAACAACTGTCTCCTTTCAACGGGACAACAGTTGGCAGAAAGCATCAATGCCAATGACAAGAGAGCAGTGTACCGACACATTGTGAAATCTGATGTGAATGTCAATGCTATTAGTGGTGAAGTAGGCTTTTCTTCCAACATCTCTTCTTCAACTAATGATCCAAACACAACTCAACCAGAGGAGGACATACAAGATGGTTCTACTGTGCTTCACCTGGCATGCCGAAGTTGTGATGTTGCAATGGTAGAGCTACTCCTACAGTATGGGGCAGACATAAATGCTATTGATTCTAAAGGAAAGACACCACTACATTACTGCACTATGATGGGGAAGCATGCAACTACAAAAGTTCTTATTACAAGGGGGGCCAATCCACTTGTCGTAGATAAAGAAGGCAACACTCCTTTTAAGCTTGCACCTGAATCTGACCATGTTGACAAAAATACTCTTGCTCTTAACCAGGAAACGACTCAAAACTCACTAGAAATATGA 2376 0.4125 MDFSKLNDSPMFRQQLQCMEESSESLRSRCFKFYKGSRKYTEGLGDAYDGDIAFASALESFGGGHNDPLFVTLGGPVMTKFAIALREISTYKEVLRSQAEHMLNDRLLNMLNVDILDVKEARRRFEKASLVYDQAREKFMSLRKSTRIDIATVVEEELHNARSSFEESRFNLVSALHNVEAKKRFEFLEAVTGVMDAHLRYYRQGYQLLHELEPFIIEVLAYTQKARESYNDEQISLCERMLEYKKHVHHESMLSLNGPYVSPGRDGNPVQPFSRISNKVADAVTESAENGKIQIIRQGYLSKRSSNLRGDWKRRYFVLDSRGMLYYFRKPWNGLHSSNPSSVHRNCATDNSAGILSRLLSSHYHGVMPDEKSVARHTVNLLTSTIKSDAEQSDLRFCFRIISPSKSYTLQAENAVDQMDWMEKITGVIASLLSAQTLSDASENGNGQSVNKLLLLKGCPDDDQALSGDSMSSEDLQKNKQSTKSEKPIEILRKVSGNDKCADCDKPDPDWASLNLGILICIECSGVHRNLGVHVSKVRSLTLDVKVWDSAVLSMLQSLGNHFANSVWEELLHSSCTSQTDESPDGSSKPQKKLFHARKPSHDDPISLKERFIHAKYDAKVFVSRIKNNNCLLSTGQQLAESINANDKRAVYRHIVKSDVNVNAISGEVGFSSNISSSTNDPNTTQPEEDIQDGSTVLHLACRSCDVAMVELLLQYGADINAIDSKGKTPLHYCTMMGKHATTKVLITRGANPLVVDKEGNTPFKLAPESDHVDKNTLALNQETTQNSLEI 791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g01888 791 SMART PH_update 295 432 IPR001849 -
Phco7g01888 791 SUPERFAMILY PH domain-like 294 441 - -
Phco7g01888 791 CDD BAR_SFC_plant 15 215 IPR035670 -
Phco7g01888 791 SMART 5bar 5 218 IPR004148 GO:0005515|GO:0005737
Phco7g01888 791 MobiDBLite consensus disorder prediction 586 602 - -
Phco7g01888 791 SMART ANK_2a 726 755 IPR002110 GO:0005515
Phco7g01888 791 SMART ANK_2a 693 722 IPR002110 GO:0005515
Phco7g01888 791 FunFam ADP-ribosylation factor GTPase-activating protein AGD1 469 631 - -
Phco7g01888 791 CDD ArfGap 489 617 - -
Phco7g01888 791 Pfam BAR domain of APPL family 6 233 IPR004148 GO:0005515|GO:0005737
Phco7g01888 791 Pfam PH domain 296 429 IPR001849 -
Phco7g01888 791 MobiDBLite consensus disorder prediction 466 487 - -
Phco7g01888 791 Gene3D - 287 446 IPR011993 -
Phco7g01888 791 PRINTS HIV Rev interacting protein signature 517 534 IPR001164 GO:0005096
Phco7g01888 791 PRINTS HIV Rev interacting protein signature 540 561 IPR001164 GO:0005096
Phco7g01888 791 PRINTS HIV Rev interacting protein signature 498 517 IPR001164 GO:0005096
Phco7g01888 791 ProSiteProfiles Ankyrin repeat region circular profile. 693 724 - -
Phco7g01888 791 Pfam Putative GTPase activating protein for Arf 488 623 IPR001164 GO:0005096
Phco7g01888 791 CDD PH_ACAP 297 434 - -
Phco7g01888 791 ProSiteProfiles Ankyrin repeat profile. 693 725 IPR002110 GO:0005515
Phco7g01888 791 ProSiteProfiles Ankyrin repeat region circular profile. 726 752 - -
Phco7g01888 791 SUPERFAMILY ArfGap/RecO-like zinc finger 486 624 IPR037278 -
Phco7g01888 791 ProSiteProfiles PH domain profile. 294 430 IPR001849 -
Phco7g01888 791 Gene3D Arf GTPase activating protein 467 631 IPR038508 -
Phco7g01888 791 Gene3D Arfaptin homology (AH) domain/BAR domain 4 250 IPR027267 -
Phco7g01888 791 Pfam Ankyrin repeats (many copies) 695 747 IPR002110 GO:0005515
Phco7g01888 791 Gene3D - 638 790 IPR036770 -
Phco7g01888 791 Coils Coil 118 138 - -
Phco7g01888 791 PANTHER CENTAURIN/ARF 2 782 IPR045258 GO:0005096
Phco7g01888 791 ProSiteProfiles ARF GTPase-activating proteins domain profile. 486 630 IPR001164 GO:0005096
Phco7g01888 791 MobiDBLite consensus disorder prediction 578 602 - -
Phco7g01888 791 SUPERFAMILY Ankyrin repeat 655 774 IPR036770 -
Phco7g01888 791 SMART arf_gap_3 486 630 IPR001164 GO:0005096
Phco7g01888 791 ProSiteProfiles Ankyrin repeat profile. 726 758 IPR002110 GO:0005515
Phco7g01888 791 SUPERFAMILY BAR/IMD domain-like 6 317 IPR027267 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g01888 Phco-Chr7 22165006 22173177 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g01888 7 22165006 22173177 Phco7g01888 7 22165006 22173177 ECH
Phco4g03204 4 52758570 52761718 Phco7g01888 7 22165006 22173177 PCT