Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g01881 ATGATGAGTGCTGTACGTACAAATGGATTAAGAATGTCAGGTTTCACAGGACTTCGTACTTTTAATCCTTTGGATACTATGTTGAGACCTGGAATAGATTTTCATTCTAAAGTATCCATTGCAACTTCTGCACGCCGAGGAAGAGCTACCAGATGCGTACCCAAAGCCATGTTTGAGCGTTTCACTGAGAAAGCAATTAAAGTAATTATGCTAGCCCAGGAGGAAGCAAGACGTCTTGGTCATAATTTTGTTGGAACAGAGCAGATTCTATTGGGTCTTATTGGTGAAGGCACTGGTATTGCCGCCAAGGTTCTAAAGTCTATGGGGATCAACCTTAAAGATGCTCGTGTGGAAGTAGAGAAGATAATTGGAAGGGGCAGTGGATTTGTGGCTGTTGAGATTCCATTTACTCCTCGTGCAAAGCGTGTTTTGGAACTTTCACTGGAGGAAGCTCGTCAACTTGGTCACAATTATATTGGATCAGAGCACCTGCTTCTGGGTCTTCTTCGAGAGGGTGAGGGTGTAGCAGCACGTGTTCTGGAAAACCTGGGTGCTGATCCTACTAACATTCGCACACAGGTTATTCGCATGGTGGGTGAGAGTGCCGACAGTGTTACTGCTACTGTTGGTTCAGGAAGTAGTGGCAATAAGATGCCAACTTTGGAGGAGTATGGTACCAATTTGACCAAGCTAGCGGAAGAGGGAAAATTGGATCCTGTTGTTGGAAGGCAGCAGCAAATTGAACGCGTGACTCAAATTTTAGGCCGTCGAACTAAAAATAATCCTTGTCTGATTGGAGAACCTGGTGTTGGGAAGACTGCAATTGCTGAAGGTCTTGCTCAGCGGATTGCAAATGGTGATGTACCGGAAACCATAGAGGGAAAAAAGGTTATAACCCTTGACATGGGTTTGCTTGTTGCTGGAACTAAATATCGTGGTGAGTTTGAGGAGAGGTTGAAGAAACTGATGGAAGAAATCAAGCAAAGTGATGAGATAATCCTTTTCATCGATGAGGTACACACTTTGATTGGAGCAGGAGCAGCAGAAGGGGCAATTGATGCTGCTAACATACTTAAGCCAGCTCTTGCAAGGGGTGAACTACAGTGTATTGGAGCCACAACATTAGATGAATATAGGAAGCACATTGAAAAAGATCCTGCTTTAGAGAGACGGTTCCAGCCAGTTAAAGTACCAGAGCCAACTGTAGATGAAACTATACAAATACTGAAAGGACTTAGAGAACGATATGAAATTCACCACAAGCTCCGCTATACTGATGAGGCTCTCGTAGCTGCTGCACAGCTGTCATACCAGTATATCAGTGATCGGTTTTTGCCTGACAAAGCTATAGATTTGATTGATGAAGCTGGTTCACGAGTTAGGCTTCAACATGCACAGTTACCTGAAGAAGCAAGAGAACTTGACAAGGAGGTCAGGCAGATTATCAAGGAGAAAGAGGAAGCTGTTCGCAACCAAGACTTTGAAAAGGCTGGAGAGCTACGAGATAGAGAAATGGATCTTAAGGCACAGATCTCAACACTTGTAGAGAAAGGAAAGGAGATGAGCAAGGCAGAGAGTGAGGCAGGGGATGAAGGTCCCACTGTTACTGAAGCTGACATACAGCACATTGTGTCATCCTGGACTGGTATTCCTGTTGAGAAAGTCTCAACAGATGAATCTGATCGCCTTCTGAAGATGGAAGAGACTTTACATAAGCGAGTGATTGGTCAGGATGAAGCGGTTAAAGCCATTAGCCGGGCTATCCGTCGAGCTCGGGTTGGATTGAAGAACCCTAACCGTCCAATTGCCAGCTTCATCTTTTCTGGTCCAACTGGTGTGGGGAAGTCTGAATTGGCCAAAGCATTGGCTGCATATTACTTTGGCTCTGAAGAAGCTATGATTCGACTTGACATGAGTGAGTTTATGGAAAGACACACAGTTTCTAAACTTATTGGTTCACCTCCTGGATATGTAGGTTACACTGAAGGTGGACAGTTGACTGAGGCAGTTCGGCGTCGACCTTACACTGTTGTACTATTTGATGAGATTGAGAAAGCCCATCCCGATGTGTTCAACATGATGCTTCAGATCCTGGAAGATGGAAGACTAACGGACAGTAAGGGAAGAACTGTGGATTTCAAGAACACACTTCTTATAATGACGTCAAATGTTGGAAGCAGTGTGATTGAGAAAGGAGGCCGCCGAATTGGATTTGATCTGGATTATGATGAGAAGGATAGCAGTTATAACAGAATCAAGAGCTTGGTGACTGAGGAGCTAAAGCAATACTTTAGGCCAGAATTTTTGAATAGGCTTGATGAGATGATTGTCTTCAGGCAACTAACAAAACTGGAGGTGAAAGAGATTGCTGACATTATGCTCAATGAGGTGTTTGATAGACTGAAGGGGAAAGATATTGAACTTCAAGTGACAGAAAGATTTAGGGACAGAGTGGTGGAGGAAGGTTATAATCCTAGTTACGGAGCCAGGCCTTTAAGAAGAGCTATAATGCGACTTTTGGAAGACAGCATGGCTGAGAAGATGCTTGCTAGAGAGATCAAAGAGGGCGACTCTGTTATAGTGGATGTTGATTCTGACGGTAACGTGATTGTGCTCAATGGTAGCAGTGGAGCCGCCGAGTCCTTACCAGAGGCACTTCCTGTATAA 2667 0.4428 MMSAVRTNGLRMSGFTGLRTFNPLDTMLRPGIDFHSKVSIATSARRGRATRCVPKAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPTNIRTQVIRMVGESADSVTATVGSGSSGNKMPTLEEYGTNLTKLAEEGKLDPVVGRQQQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIANGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPTVDETIQILKGLRERYEIHHKLRYTDEALVAAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLQHAQLPEEARELDKEVRQIIKEKEEAVRNQDFEKAGELRDREMDLKAQISTLVEKGKEMSKAESEAGDEGPTVTEADIQHIVSSWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLNEVFDRLKGKDIELQVTERFRDRVVEEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDVDSDGNVIVLNGSSGAAESLPEALPV 888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g01881 888 Coils Coil 471 491 - -
Phco7g01881 888 Gene3D - 781 880 - -
Phco7g01881 888 Gene3D - 209 401 IPR027417 -
Phco7g01881 888 Gene3D - 553 779 IPR027417 -
Phco7g01881 888 CDD AAA 241 393 - -
Phco7g01881 888 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 218 497 IPR027417 -
Phco7g01881 888 ProSitePatterns Chaperonins clpA/B signature 2. 635 653 IPR028299 -
Phco7g01881 888 ProSiteProfiles Clp repeat (R) domain profile. 58 200 IPR004176 -
Phco7g01881 888 FunFam ATP-dependent Clp protease ATP-binding subunit 402 487 - -
Phco7g01881 888 FunFam ATP-dependent Clp protease ATP-binding subunit ClpC 57 205 - -
Phco7g01881 888 SUPERFAMILY Double Clp-N motif 59 200 IPR036628 -
Phco7g01881 888 Pfam Clp amino terminal domain, pathogenicity island component 72 124 IPR004176 -
Phco7g01881 888 Pfam Clp amino terminal domain, pathogenicity island component 148 199 IPR004176 -
Phco7g01881 888 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 550 868 IPR027417 -
Phco7g01881 888 Gene3D UVR domain 467 531 - -
Phco7g01881 888 PANTHER ATP-DEPENDENT CLP PROTEASE 62 868 - -
Phco7g01881 888 Coils Coil 312 332 - -
Phco7g01881 888 Gene3D - 57 206 IPR036628 -
Phco7g01881 888 ProSiteProfiles UVR domain profile. 475 510 IPR001943 GO:0005515
Phco7g01881 888 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 650 668 IPR001270 GO:0005524
Phco7g01881 888 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 605 623 IPR001270 GO:0005524
Phco7g01881 888 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 679 697 IPR001270 GO:0005524
Phco7g01881 888 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 712 726 IPR001270 GO:0005524
Phco7g01881 888 Pfam C-terminal, D2-small domain, of ClpB protein 781 861 IPR019489 -
Phco7g01881 888 ProSitePatterns Chaperonins clpA/B signature 1. 353 365 IPR018368 GO:0005524
Phco7g01881 888 SMART ClpB_D2_small_2 781 871 IPR019489 -
Phco7g01881 888 FunFam ATP-dependent Clp protease subunit 554 779 - -
Phco7g01881 888 FunFam Chaperone clpB 1, putative 209 401 - -
Phco7g01881 888 CDD RecA-like_ClpB_Hsp104-like 562 778 - -
Phco7g01881 888 SMART AAA_5 258 398 IPR003593 GO:0016887
Phco7g01881 888 SMART AAA_5 601 782 IPR003593 GO:0016887
Phco7g01881 888 Pfam AAA lid domain 401 502 IPR041546 -
Phco7g01881 888 Gene3D - 403 547 - -
Phco7g01881 888 Pfam AAA domain (Cdc48 subfamily) 600 774 IPR003959 GO:0005524|GO:0016887
Phco7g01881 888 Pfam ATPase family associated with various cellular activities (AAA) 263 379 IPR003959 GO:0005524|GO:0016887
Phco7g01881 888 FunFam ATP-dependent chaperone ClpB 781 874 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g01881 Phco-Chr7 21997810 22004261 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g01881 7 21997810 22004261 Phco7g01881 7 21997810 22004261 ECH
Phco4g03211 4 52801172 52811643 Phco7g01881 7 21997810 22004261 PCT