Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g03211 ATGAAGAAGAAGAAACCTGAAAGAGAAAGAAACTGCGTGCAATCGAGAAACAACTGTTATCTTCGCCGTCCACCACGCCTTCTCTCTATATCCCTTATTTTTCACTTCAACAATATAGGAATAATGGCTAGGGTTTTGGCTCAGTCTATCGGTATGCCTGGCCTACTGAGTGGACAAAGGCATGGGCAGCATAAGGGATCAGGAAAATCAAAAAGGTCTCTCAAAATGATGAGTAACTTACAAATGCCTGGATTAAGAATGTCAAGTTTCTCTGGACTGCGTACTATGAACAATTTGGATCTTCTTTCGAGATCTCGACGAAGTTTACCTCATAAGATGTTGACTTCAACTTCTTCCCGTCGTGAAAGGGCTAAAAGATTCGTACCCAGAGCGATGTTTGAGCGTTTCACTGAGAAAGCAATCAAAGTAATTATGCTAGCCCAGGAGGAAGCTAGGCGGCTGGGACATAATTTTGTTGGAACAGAACAGATTTTATTAGGTCTTATCGGTGAAGGCACTGGCATTGCTGCCAAGGTGCTGAAGTCAATGGGAATTAACCTTAAGGATTCTCGTGTGGAAGTGGAAAAGATAATTGGAAGGGGCAGTGGATTTGTTGCAGTTGAGATTCCATTTACTCCCCGTGCAAAACGTGTTTTGGAACTCTCACTAGAGGAAGCTCGCCAACTTGGTCACAATTATATTGGATCTGAGCACTTGCTTCTTGGTCTTCTACGAGAGGGTGAGGGTGTAGCAGCACGTGTTCTTGAAAATCTGGGTGCTGATCCAAACAATATTCGTGCTCAGGTTATTCGCATGGTTGGTGAGGGTGCTGACAGTGTTGGTGCTACTGTTGGTCCTGGAAGTAGTAATAACAATAAGATGCCAACTTTGGAGGAGTATGGCACCAATTTGACTAAGCTAGCTGAAGAGGGAAAATTGGATCCTGTCGTTGGTAGACAACCACAAATTGAACGTGTCACTCAAATCTTGGGTCGTCGTACCAAAAATAATCCTTGTCTTATTGGAGAACCTGGGGTTGGGAAGACAGCTATCGCTGAAGGGCTTGCCCAAAGGATTGCAAATGGTGATGTTCCTGAAACCATAGAGGGGAAGAAGGTTATAACTCTTGATATGGGTCTACTGGTGGCTGGAACTAAATATCGTGGAGAATTTGAGGAGAGATTGAAGAAACTGATGGAGGAAATCAAACAAAGTGATGAGATAATACTTTTTATTGATGAAGTACACACTCTAATTGGAGCTGGAGCGGCTGAGGGGGCGATTGATGCTGCAAACATACTAAAGCCTGCTCTTGCCAGAGGTGAACTGCAGTGTATTGGAGCCACGACGCTGGATGAATATAGGAAGCACATTGAAAAGGATCCAGCACTGGAGAGGCGATTCCAGCCAGTTAAAGTGCCAGAGCCAACTGTAGATGAAACCATACAAATATTGAAAGGGCTTAGGGAACGCTACGAGATTCATCACAAACTCCAATACACAGATGATGCACTTGTAGCTGCTGCCCAGCTGTCACACCAGTATATTAGTGATCGATTTTTGCCTGACAAAGCTATAGATTTAATTGATGAAGCAGGTTCCCGTGTTCGGCTTCAACATGCGCAGTTACCAGAAGAAGCAAGAGAGCTTGACAAGGAGGTCAGACAGATTGTGAAGGATAAAGAAGAAGCTGCTCGCAATCAAGACTTTGAAAAGGCTGGAGGGCTACGAGATAAAGAAATGGATCTTAAGGCCCAGATATCCGCACTTATAGAAAAAGGCAAGGAGATGAACAAGGCAGAAATTGAGGCAGGAGATGGATGTCCCATGGTGACTGAAGTTGACATACAGCATATTGTCTCCTCCTGGACTGGTATTCCGGTAGAGAAAGTCTCAACTGATGAATCTGATCGCCTACTCAAGATGGAAGAGACTTTACACACACGAGTCATAGGTCAGGATGAAGCAGTAAAAGCAATTAGCCGGGCCATCCGTCGAGCTAGGGTGGGATTGAAGAATCCTAATCGACCAATTGCCAGCTTCATCTTTTCTGGGCCAACTGGTGTGGGGAAGTCTGAATTGGCTAAAGCTTTGGCTGCATACTATTTTGGTTCTGAAGAAGCCATGATTAGGCTTGACATGAGTGAATTTATGGAAAGACACACAGTCTCCAAACTCATTGGTTCTCCCCCTGGATATGTTGGTTACACTGAGGGTGGTCAACTGACTGAGGCAGTTCGGCGTTGTCCCTATACTGTTGTGCTATTTGACGAGATTGAGAAAGCCCATCCTGATGTATTCAACATGATGCTTCAGATCCTGGAAGATGGAAGACTAACAGATAGCAAGGGAAGAACTGTGGACTTCAAGAACACTCTTCTAATAATGACATCAAATGTTGGAAGCAGTGTGATTGAGAAAGGAGGACGTAAAATGGGATTTGACCTTAGTTATGATGAGAAGGATAGCAGTTACAATCGAATCAAGAGCTTGGTGACTGAGGAGCTGAAACAATACTTTAGGCCAGAGTTCCTTAATCGGTTAGATGAAATGATTGTTTTCAGGCAACTCACCAAGCTGGAGGTAAAGGAGATAGCAGACATAATGTTGAAGGAGGTGTTTGAAAGACTAAAGGTCAAAGAGATTGATCTCTCAGTGACAGAAAGATTTAGGGAAAGGGTGGTTGAGGAAGGATATAATCCTAGTTATGGGGCTAGGCCTCTAAGAAGGGCCATCATGCGACTTTTGGAGGACAGTATGGCCGAGAAGATGCTTGCTAGAGAGATTAAAGAGGGAGACTCAGTTATAGTGGATGCCGATTCTGATGGTAATGTGATTGTGCTCAACGGTAGTAGTGGTGTCCAGGAGTCACTATCAGAATCTCTTCCTGTGTAA 2895 0.4411 MKKKKPERERNCVQSRNNCYLRRPPRLLSISLIFHFNNIGIMARVLAQSIGMPGLLSGQRHGQHKGSGKSKRSLKMMSNLQMPGLRMSSFSGLRTMNNLDLLSRSRRSLPHKMLTSTSSRRERAKRFVPRAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDSRVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPNNIRAQVIRMVGEGADSVGATVGPGSSNNNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIANGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPTVDETIQILKGLRERYEIHHKLQYTDDALVAAAQLSHQYISDRFLPDKAIDLIDEAGSRVRLQHAQLPEEARELDKEVRQIVKDKEEAARNQDFEKAGGLRDKEMDLKAQISALIEKGKEMNKAEIEAGDGCPMVTEVDIQHIVSSWTGIPVEKVSTDESDRLLKMEETLHTRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRCPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRKMGFDLSYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFERLKVKEIDLSVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDADSDGNVIVLNGSSGVQESLSESLPV 964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g03211 964 CDD RecA-like_ClpB_Hsp104-like 638 854 - -
Phco4g03211 964 Pfam Clp amino terminal domain, pathogenicity island component 223 274 IPR004176 -
Phco4g03211 964 Pfam Clp amino terminal domain, pathogenicity island component 147 199 IPR004176 -
Phco4g03211 964 Gene3D UVR domain 543 601 - -
Phco4g03211 964 Gene3D - 857 957 - -
Phco4g03211 964 FunFam Chaperone clpB 1, putative 286 477 - -
Phco4g03211 964 FunFam ATP-dependent Clp protease ATP-binding subunit 478 563 - -
Phco4g03211 964 FunFam ATP-dependent Clp protease ATP-binding subunit ClpC 132 280 - -
Phco4g03211 964 FunFam ATP-dependent Clp protease subunit 630 855 - -
Phco4g03211 964 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 726 744 IPR001270 GO:0005524
Phco4g03211 964 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 788 802 IPR001270 GO:0005524
Phco4g03211 964 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 681 699 IPR001270 GO:0005524
Phco4g03211 964 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 755 773 IPR001270 GO:0005524
Phco4g03211 964 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 626 943 IPR027417 -
Phco4g03211 964 ProSitePatterns Chaperonins clpA/B signature 2. 711 729 IPR028299 -
Phco4g03211 964 Pfam ATPase family associated with various cellular activities (AAA) 339 455 IPR003959 GO:0005524|GO:0016887
Phco4g03211 964 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 294 570 IPR027417 -
Phco4g03211 964 Pfam AAA lid domain 477 578 IPR041546 -
Phco4g03211 964 Coils Coil 547 567 - -
Phco4g03211 964 SMART AAA_5 677 858 IPR003593 GO:0016887
Phco4g03211 964 SMART AAA_5 334 474 IPR003593 GO:0016887
Phco4g03211 964 CDD AAA 317 469 - -
Phco4g03211 964 Gene3D - 479 623 - -
Phco4g03211 964 Pfam C-terminal, D2-small domain, of ClpB protein 857 937 IPR019489 -
Phco4g03211 964 ProSitePatterns Chaperonins clpA/B signature 1. 429 441 IPR018368 GO:0005524
Phco4g03211 964 Gene3D - 629 855 IPR027417 -
Phco4g03211 964 SUPERFAMILY Double Clp-N motif 134 274 IPR036628 -
Phco4g03211 964 PANTHER ATP-DEPENDENT CLP PROTEASE 137 944 - -
Phco4g03211 964 ProSiteProfiles Clp repeat (R) domain profile. 133 275 IPR004176 -
Phco4g03211 964 SMART ClpB_D2_small_2 857 947 IPR019489 -
Phco4g03211 964 ProSiteProfiles UVR domain profile. 551 586 IPR001943 GO:0005515
Phco4g03211 964 Gene3D - 287 477 IPR027417 -
Phco4g03211 964 Pfam AAA domain (Cdc48 subfamily) 676 850 IPR003959 GO:0005524|GO:0016887
Phco4g03211 964 Gene3D - 132 279 IPR036628 -
Phco4g03211 964 FunFam ATP-dependent chaperone ClpB 857 950 - -
Phco4g03211 964 Coils Coil 388 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g03211 Phco-Chr4 52801172 52811643 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g03211 4 52801172 52811643 Phco7g01881 7 21997810 22004261 PCT