Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g01731 ATGATCATGGCTACATTGAAACACCCTTCACTGTTTGTCACATTGGTGGCACTTCTAGTGCTGGCTCTTTTCGTGGCTCCAACATCCTCCACGTCCAGAAAAACCCTCAAGCACCACCCTTGTCCAACAAATGGGTTCCGAGTCATGCTTCACCACGTTGACTCGGGGAAAAACCTAACCAAACTAGAGCGTGTGCAACACGGGATCAAGCGTGGAAAAAGTAGGCTTCAGAGGCTGAACGCAATGGTGTTGGCAGCTTCAACCACACCAAATTCTGATCAGTTGGAAGCCCCTATCCATGCAGGGAATGGAGAGTACTTGATGGAGTTAGCCATAGGAACTCCACCAGTGTCTTACCCTGCAGTTTTGGACACTGGCAGTGACCTCATATGGACACAGTGCAGGCCTTGCACACGATGTTACAAGCAACCAACACCCATTTTTGACCCCAAGAAGTCGTCTTCGTTTTCCAAGGTCTCATGTGGTAGCAGCTTATGCAGTGCTTTGCCTTCATCTACATGCAGTGATGGGTGTGAGTATGTGTATTCATACGGTGATTATTCAGTTACACAAGGGGTGTTGGGCACTGAGACCTTCACTTTTGGAAAGTCTAAGAAGAAAGTTTCGGTTGACAACATTGGTTTTGGTTGTGGGGAGGATAACGAAGGTGATGGGTTTGAACAAGCCTCGGGGTTGGTCGGGCTTGGACGTGGTCCTTTGTCTTTGGTTTCTCAACTGAATGAACCGAGATTTTCTTATTGTTTGACCCCAATAGATGACACAAAAAAGAGTGTTTTGTTGCTGGGGTCTTCAGAAAAGGTGAAAGATGCAACAGAAGGGGTGACAACCCCTCTTCTCAAAAACCCTTTGCAACCTTCTTTTTACTACCTTTCTCTTGAAGGTATCTCTGTGGGGGACACTAGATTGGCCATTGAGAAGTCCACTTTTGATGTGGGGAATGATGGGAGTGGAGGTGCGATCATAGACTCTGGCACCACAATTACCTACATTGAACAAAAGGCCTTTGATGAACTGAAGAAAGAGTTCATTTCTCAAACCAAGCTTCCTGTGGACAAAACTAGCTCAACCGGGTTGGATCTTTGTTTCTCTCTGCCATCAGATGCAACAGAAGTGGAAATTCCCAAGCTGGTTTTCCACTTCACTGGTGGTGATTTGGAGCTGCCTGCTGAGAACTACATGATTGGTGATTCCAGCTTGGGAGTGGCTTGCTTGGCCATGGGTGCTGCCAGTGGAATGTCTATATTCGGGAATGTTCAACAGCAGAACATTTTGGTGAGCCATGATCTCCAAAAAGATACCATTTCTTTCATTCCTACGTCCTGTGATAAGTTGTGA 1356 0.4646 MIMATLKHPSLFVTLVALLVLALFVAPTSSTSRKTLKHHPCPTNGFRVMLHHVDSGKNLTKLERVQHGIKRGKSRLQRLNAMVLAASTTPNSDQLEAPIHAGNGEYLMELAIGTPPVSYPAVLDTGSDLIWTQCRPCTRCYKQPTPIFDPKKSSSFSKVSCGSSLCSALPSSTCSDGCEYVYSYGDYSVTQGVLGTETFTFGKSKKKVSVDNIGFGCGEDNEGDGFEQASGLVGLGRGPLSLVSQLNEPRFSYCLTPIDDTKKSVLLLGSSEKVKDATEGVTTPLLKNPLQPSFYYLSLEGISVGDTRLAIEKSTFDVGNDGSGGAIIDSGTTITYIEQKAFDELKKEFISQTKLPVDKTSSTGLDLCFSLPSDATEVEIPKLVFHFTGGDLELPAENYMIGDSSLGVACLAMGAASGMSIFGNVQQQNILVSHDLQKDTISFIPTSCDKL 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g01731 451 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 326 337 IPR001969 GO:0004190|GO:0006508
Phco7g01731 451 Pfam Xylanase inhibitor N-terminal 106 270 IPR032861 -
Phco7g01731 451 FunFam Aspartyl protease family protein 270 451 - -
Phco7g01731 451 CDD pepsin_A_like_plant 105 448 IPR034161 -
Phco7g01731 451 PRINTS Pepsin (A1) aspartic protease family signature 112 132 IPR001461 GO:0004190|GO:0006508
Phco7g01731 451 PRINTS Pepsin (A1) aspartic protease family signature 326 337 IPR001461 GO:0004190|GO:0006508
Phco7g01731 451 Gene3D Acid Proteases 270 451 IPR021109 -
Phco7g01731 451 ProSiteProfiles Peptidase family A1 domain profile. 106 444 IPR033121 -
Phco7g01731 451 Pfam Xylanase inhibitor C-terminal 295 443 IPR032799 -
Phco7g01731 451 Gene3D Acid Proteases 83 269 IPR021109 -
Phco7g01731 451 FunFam Probable aspartic protease At2g35615 85 269 - -
Phco7g01731 451 SUPERFAMILY Acid proteases 99 449 IPR021109 -
Phco7g01731 451 PANTHER OS07G0603500 PROTEIN-RELATED 57 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g01731 Phco-Chr7 17382878 17384233 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g01731 7 17382878 17384233 Phco7g01731 7 17382878 17384233 ECH
Phco4g03128 4 52110449 52113597 Phco7g01731 7 17382878 17384233 ECH