Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g03128 ATGAAGATGGGGAAAGTGGAGATGGTGCTTGCAATGATGGTGTTGTTCAACATGTCTTCTTGTTCGGCTTGGTTTGGTAACAAACACAAAAGTGGAAGGAACTCAATTCTCCCAGGTCAAGCCACGTCATCATCATGTCCAAGGCTATTGAATCCTGCTGGCTCTTCTGTTGTGATCCCTCTTCATGGCAACGTTTATCCTGTTGGGTTCTATAATGTTACTCTCAATATCGGTCAGCCACCAAGGCCTTATTTTCTTGATGTGGACACTGGTAGTGACCTCACATGGCTCCAGTGTGATGCCCCTTGTACCCATTGCTCTGAGACACCCCATCCACTGTACAGGCCTAGCAATGACTTTGTTCCTTGCAAGGATCCCCTTTGTGCATCCTTGCAGGCCTCTGATGACTACAACTGTGAGCACCCTGATCAATGTGACTATGAAATTAATTATGCAGATCAGTATTCAACCTTCGGTGTGCTTCTAAATGATGTCTACCTTCTTAACTTTACCAATAGAGTCCAACTTAAAGTTCGGATGGCACTCGGATGTGGATATGATCAAGTCTTCTCACCTTCTTCTTACCATCCCTTAGATGGAATACTTGGCCTTGGAAGGGGAAAGACCAGCTTGGTATCCCAGCTGAATAATCAGGGCTTGGTGCGAAATGTGATTGGGCACTGTTTAAGTTCACAAGGAGGAGGGTATATCTTCTTTGGAAATACATATGATTCTGCTCGAGTGACATGGACTCCAATGTCATCCGTAGATCCCAAACATTACTCTGCAGGGCCAGCTGAACTTGTTTTTGGAGGGAGGAAAACTGGGGTTGGGAGTCTGACTGCTGTTTTTGACACTGGGAGTTCTTATAGTTACTTCAACTCTCGTGCTTACCAAGCATTACTTTCTTGGCTGAAGAAGGATTTAACTGGAAAGCCCCTGAAAGCAGCACCTGATGATCAGACTTTACCTCTCTGCTGGCACGGTAGAAGACCTTTCAAAAGCATACGTGAAGTTCGAAGATACTTCAAGCCTGTGGCACTTACTTTCAACAATGGTGGAAGAGTTAAAGCTCAATTTGAGATAGCTCCTGAAGCTTATCTTATTATATCAAACCTGGGAAATGTTTGTCTGGGCATTCTAAACGGCTCTGAAATAGGTTTGGAGGAACTGAACCTAATTGGAGACATATCCATGCAAGAGAAGGTGATGGTATTCGAAAATGAGAAGAACCTGATTGGTTGGGGACCGGCAGATTGCAGCCGTGTTCCAAAAGCTAGAGATGTCAGTATTTGA 1296 0.4452 MKMGKVEMVLAMMVLFNMSSCSAWFGNKHKSGRNSILPGQATSSSCPRLLNPAGSSVVIPLHGNVYPVGFYNVTLNIGQPPRPYFLDVDTGSDLTWLQCDAPCTHCSETPHPLYRPSNDFVPCKDPLCASLQASDDYNCEHPDQCDYEINYADQYSTFGVLLNDVYLLNFTNRVQLKVRMALGCGYDQVFSPSSYHPLDGILGLGRGKTSLVSQLNNQGLVRNVIGHCLSSQGGGYIFFGNTYDSARVTWTPMSSVDPKHYSAGPAELVFGGRKTGVGSLTAVFDTGSSYSYFNSRAYQALLSWLKKDLTGKPLKAAPDDQTLPLCWHGRRPFKSIREVRRYFKPVALTFNNGGRVKAQFEIAPEAYLIISNLGNVCLGILNGSEIGLEELNLIGDISMQEKVMVFENEKNLIGWGPADCSRVPKARDVSI 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g03128 431 ProSiteProfiles Peptidase family A1 domain profile. 71 416 IPR033121 -
Phco4g03128 431 Gene3D Acid Proteases 50 239 IPR021109 -
Phco4g03128 431 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 86 97 IPR001969 GO:0004190|GO:0006508
Phco4g03128 431 FunFam Aspartyl protease family protein 48 241 - -
Phco4g03128 431 Pfam Xylanase inhibitor C-terminal 278 415 IPR032799 -
Phco4g03128 431 Pfam Xylanase inhibitor N-terminal 71 241 IPR032861 -
Phco4g03128 431 Gene3D Acid Proteases 240 425 IPR021109 -
Phco4g03128 431 FunFam Aspartic proteinase Asp1 isoform A 244 424 - -
Phco4g03128 431 SUPERFAMILY Acid proteases 63 423 IPR021109 -
Phco4g03128 431 PANTHER ASPARTYL PROTEASES 51 414 IPR001461 GO:0004190|GO:0006508
Phco4g03128 431 PRINTS Pepsin (A1) aspartic protease family signature 77 97 IPR001461 GO:0004190|GO:0006508
Phco4g03128 431 PRINTS Pepsin (A1) aspartic protease family signature 282 293 IPR001461 GO:0004190|GO:0006508
Phco4g03128 431 PRINTS Pepsin (A1) aspartic protease family signature 392 407 IPR001461 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g03128 Phco-Chr4 52110449 52113597 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g03128 4 52110449 52113597 Phco4g03128 4 52110449 52113597 ECH
Phco4g03128 4 52110449 52113597 Phco7g01731 7 17382878 17384233 ECH