Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g01696 ATGCTGATCTCTGATGAGGGAGATTGTGATGTGTTTTTTGACTCAGTGGATTGCTTCTCACCAACCCAAGGGTCTCGGACAGAAGAAGAGTTGGGTTATGAGATTTGGTTGAATGAGCCTGTGAGTGTGAAGGAAAGGAGGGGAAAGTTTTTGCAGGGAATGGGGTGGGATGATGGTTCTTCCAAGGGTTGTGCTCAAGAGAATAATATGATGAATTCTGATAACTCATCAGTGAGATTTGAACTGGAGAGGACCAGCGATAGTGGGGCAGTTTCAAATACTTCTAGTTGTATTTTGCCTTATGATCAGGTTTCAGAGGAGTTAGTTCTCTCGGGAAGGGAAACAACTTCTGAGGCACAAGGCTTGTTTGACGATCAGAAAGGAGGCCCCCAAGATAAACCAGATGCAAGTTTAGAAGAGAAGATTTATGAGGTTTCTTTTACAGATGAAGAGATTAGACATAGAAAAGCTGAGTCTCGAGAGAAGAAAAGTTGGTGGAAGCACTTTATGAGCAACAAAAAAGGAGGTTGGGGTAAAATCAGTTCAAAATTGGATTCAGGGCCAAATAAAAGTCGTAGAATAAAAGTAAAGCAGAATAAGAAGAGGTGGATGGAGTTGAGTGCACTGTATATTGGGCAAGAGATTAGAGCTCACGAAGGCCTGATTTGGACTATGAAGTTTAGTCCCAATGGCCAATATCTGGCTAGTGGAGGTGAAGATGGTGTAATACGCATATGGCGTGTGACATCACTAGATACATCTAGTATCTGCTTCAATGCAGAAGGCAGTGCTGTTAGAAAAGTGAAACGTGGCTCCTCTTGCTCTCAGAAGAAATACTCAAGCCAATCCTTCGCTGTTCTTCCTAACAAGATTTTGAAAGTCGAGGAATCGCCATTGCATGAATTTTATGGTCACACCAGAGATGTCTTGGATTTGGCTTGGTCCAATTCAGATACTCTCCTTTCATCTTCTTCGGATAAAACTGTTCGCTTGTGGAAAATTGGTTGTAATCAATGTCTAAGTGTTTTCCATCACAAAGACTATGTGACTTGCATTCAGTTCAACCCCGTTGACGAAAATTTTTTCATCACTGGTTCCATAGATGGCAAAGTCCGAATATGGGGGATACATGAAGAGAGAGTTGTTGACTGGGCAGACATACGAGATGTGATAAGTGCTATAAGTTTCCGACCAGATGGACAAGGGTTTCTAGTCGGTTCCCTCACAGGCACTTGCCGCTTTTATGTTGCCTCAGGCAAACATTTCCAGCTTGATGCCCAAATTCGTGTCAATGGAAAGAAGAGAACATCTGGCAACAAGATCACAGGCATTCAGTTTTCTCAGAAAAACCATCAGAGAGTTATGATTACATCTGAAGATTCCAAAGTTAGAATATTGGAAGGCGTTGAACTTGTTCAAACATATAAAGGTTTTTCAAGATCTGGAAGTCAGATGTCTGGTTCATTTACCTCTGGTGGAGAGCATATAATTTCAGTAGGAGGGGACTCTCGTGTATATATTTGGAACTTCAATGACTTGGGAAATACTTCTCCCAAAAGTACAAAATCCAAGTATTCATGTGAGTACTTTGGCTCTCAAGGGGTTACTATTGCAATACCTTGGTCTGGCATGACTACAGAACAAAGAGGTTTTGGCAATGATTTTGCCCACTATTCTTCAGGAATGCATCACCAACTAGAGGCTGCTCATGGTGTCAGGGAATCAGAACGTTTTTCTTTTGGAAGTTGGTTCTCCATTGATGGTACATGCCGGGGTTCTGTGACGTGGCCTGAAGAGAAGCTTCCTAGTTGGGATTTACCTCTTGCAGAAGTTGAATTTGATCACCAGAAGCCATGTATCAAAGATCCTTCCCATGAAAAATACGTATCAGAAACATGGGGACTATCAATTGTGACAGCAGGTCTTGATGGAACCATCAAGACATTCCACAACTTTGGACTTCCTATCAGGCTTTAG 1977 0.4203 MLISDEGDCDVFFDSVDCFSPTQGSRTEEELGYEIWLNEPVSVKERRGKFLQGMGWDDGSSKGCAQENNMMNSDNSSVRFELERTSDSGAVSNTSSCILPYDQVSEELVLSGRETTSEAQGLFDDQKGGPQDKPDASLEEKIYEVSFTDEEIRHRKAESREKKSWWKHFMSNKKGGWGKISSKLDSGPNKSRRIKVKQNKKRWMELSALYIGQEIRAHEGLIWTMKFSPNGQYLASGGEDGVIRIWRVTSLDTSSICFNAEGSAVRKVKRGSSCSQKKYSSQSFAVLPNKILKVEESPLHEFYGHTRDVLDLAWSNSDTLLSSSSDKTVRLWKIGCNQCLSVFHHKDYVTCIQFNPVDENFFITGSIDGKVRIWGIHEERVVDWADIRDVISAISFRPDGQGFLVGSLTGTCRFYVASGKHFQLDAQIRVNGKKRTSGNKITGIQFSQKNHQRVMITSEDSKVRILEGVELVQTYKGFSRSGSQMSGSFTSGGEHIISVGGDSRVYIWNFNDLGNTSPKSTKSKYSCEYFGSQGVTIAIPWSGMTTEQRGFGNDFAHYSSGMHHQLEAAHGVRESERFSFGSWFSIDGTCRGSVTWPEEKLPSWDLPLAEVEFDHQKPCIKDPSHEKYVSETWGLSIVTAGLDGTIKTFHNFGLPIRL 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g01696 658 FunFam WD repeat-containing protein 44 199 541 - -
Phco7g01696 658 SMART WD40_4 336 375 IPR001680 GO:0005515
Phco7g01696 658 SMART WD40_4 431 467 IPR001680 GO:0005515
Phco7g01696 658 SMART WD40_4 295 333 IPR001680 GO:0005515
Phco7g01696 658 SMART WD40_4 377 416 IPR001680 GO:0005515
Phco7g01696 658 SMART WD40_4 208 247 IPR001680 GO:0005515
Phco7g01696 658 SMART WD40_4 468 509 IPR001680 GO:0005515
Phco7g01696 658 Pfam WD domain, G-beta repeat 338 374 IPR001680 GO:0005515
Phco7g01696 658 Pfam WD domain, G-beta repeat 297 333 IPR001680 GO:0005515
Phco7g01696 658 Pfam WD domain, G-beta repeat 214 246 IPR001680 GO:0005515
Phco7g01696 658 PANTHER WD REPEAT DOMAIN 44 10 655 IPR040324 -
Phco7g01696 658 MobiDBLite consensus disorder prediction 115 135 - -
Phco7g01696 658 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 342 374 - -
Phco7g01696 658 SUPERFAMILY WD40 repeat-like 211 648 IPR036322 GO:0005515
Phco7g01696 658 ProSiteProfiles Trp-Asp (WD) repeats profile. 342 384 IPR001680 GO:0005515
Phco7g01696 658 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 302 334 - -
Phco7g01696 658 ProSiteProfiles Trp-Asp (WD) repeats profile. 302 342 IPR001680 GO:0005515
Phco7g01696 658 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 215 250 - -
Phco7g01696 658 Gene3D - 204 539 IPR015943 GO:0005515
Phco7g01696 658 PRINTS G protein beta WD-40 repeat signature 362 376 IPR020472 -
Phco7g01696 658 PRINTS G protein beta WD-40 repeat signature 320 334 IPR020472 -
Phco7g01696 658 PRINTS G protein beta WD-40 repeat signature 234 248 IPR020472 -
Phco7g01696 658 ProSiteProfiles Trp-Asp (WD) repeats profile. 215 256 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g01696 Phco-Chr7 16861823 16864954 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g01696 7 16861823 16864954 Phco7g01696 7 16861823 16864954 ECH
Phco4g03066 4 51624669 51628233 Phco7g01696 7 16861823 16864954 PCT