Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g03066 ATGCTGGGCTCTGATGATGGAGATATTGATGTGTTCTTTGACTCACTGGATAGTTTGTCAGCTCAAGATTCTGTTTTAGCCAAAGAAGAGTTTGACTCTGAAAGGTGTGGTTGTGATTATGGTGACATTTGGGTGAAGGAGCCTGTTAGTGTGAAGGAAAGGAGGGAACGTTTTTTGCAGGATTTGGGTTTAGACTATGCTTCTTCTTCCGAGGTTTGTTATCAAGAGAAAATGAACTTTGATAACTCATCCATCAGTTTGGGATTTGAGAGGATCAGGAAGTGCAGTGGAGCAATCTCAAATGCTTCAATTTCGCATAACGAAGTATCTGAGGAGTCGGCTCTCTCTGGAGGCAAAACAGCTTCTGAAGCAAAAATCTCACTGGATGAAGTGAAAGGGTGTCCCCAAGGTGAAGCAGATGCAAACTTTGAAGGAAAAGAGCACGACTTCTCTTCTATAAATCAGGAGCACAGAGAAGCTGATGCCCAAGAATTTCAGGATTTTGACATGGGTAAAAGGAAAAGGAAAAACTGGTGGAAACGCCTGGTGAACGAGAGGAAAGGGGTTGAAGGAAATGCTAGATCAAAATTTAATGCGGGAGCAAATAAAACTCGAAGAATAAAGGTAAGACAGAATAAAAAGAGGTGGCTAGAGTTTAGCGGCCTATTCATTGGACAAGAGGTTAGAGCTCACAAAGGTCTAATCTGGACCATGAAATTTAGTCCCTGTGGTCAGTATTTAGCCAGTGGAGGTGAAGATGGTGTTGTTCGCATATGGCGTGTTACATCACTGGATAAATCAAGTATTTGTTTCACCTCAAAAGACAGCACTTCGAATTGTAAAGTGGAATGTAAAAACACTTCTCCTAAGAAGAAAAACTCATGTCAACCCTTCATTTTCCTTCCAAATAGTATTTTTCAAATAGAGGAATCACCACTGCAAGAATTTTTTGGTCATTCTAGTGATGTCTTGGATTTGGCTTGGTCTAATTCAGATATTCTCCTTTCATCTTCTATGGATAAAACTGTTCGTTTATGGCAAATTGATTGTAATCAAAGTCTAAGTGTTTTCCATCACAATGACTATGTGACATGCATTCAATTCAACCCTGTTGATGAAAATTACTTCATTAGTGGATCCATTGATGGTAAGGTTCGAATATGGGGGATACGTGAAGAGCGAGTCATTGACTGGGCAAATATACGAGATGTCATAAGTGCTATAAGTTACCAGGAAGATGGGAAAGGATTTATAGTTGGTTGTGTTACAGGCACTTGTCGTTTTTATGTTGCTTCAGGAAAATATTTCCAGCTTGAGGCGCAGATAGATGTATGTGGTAAGAAGAAAGCATCAGGCAACAAGATTACTGGCATTCAGTTCTCCCAAAAAAGTTGCCAGAGAATTATGATCACAACAGAAGATTCCAAAATTCATATTTATGATGGCATTGAGCTTGTTCAGAAATACAAAGGTCTTCCAAAGTCGGGAAGTCAAATGTCGGGTTCATTTACATCAAGTGGAAAACATATAATTTCAGTTGGAGAGGACTCTCATGTTTACATTTGGAACTTGGATGACTTGGGAAATGCTTCTCCTAAACACACGAAATCTGAACGCTCATGTGAGTACTTCTTTTCCAAGGGTGTTACTGTTGCAATACCTTGGTCAGATGTGAAAGCATATCAAAGGGGTTCTAGCAGTAACTTTTCCCACCATTCTTCAGAAATGCAAACCCAGTCAGAGATTGCTCCTGAGATTAGAGATCCAGATCGTTTTTCTCTTGGTAATTGGTTTGCCATTGATGGCACATGCCGAGGTTCTGTGACATGGCCTGAGGAGAAACTTCCTAGCTGGGATTTACCTATAGCAGAAGATAAATATGATGAGCAGCAGTTATGTCACAAAAATACTTGTCAAGACAGAATTGTATCAGAAACATGGGGGCTATCAATTGTGGTGGCTGCTTGTGATGGAACTATTAAGACATTCCACAACTTTGGATTACCCATTAGGTTCTAA 2019 0.3997 MLGSDDGDIDVFFDSLDSLSAQDSVLAKEEFDSERCGCDYGDIWVKEPVSVKERRERFLQDLGLDYASSSEVCYQEKMNFDNSSISLGFERIRKCSGAISNASISHNEVSEESALSGGKTASEAKISLDEVKGCPQGEADANFEGKEHDFSSINQEHREADAQEFQDFDMGKRKRKNWWKRLVNERKGVEGNARSKFNAGANKTRRIKVRQNKKRWLEFSGLFIGQEVRAHKGLIWTMKFSPCGQYLASGGEDGVVRIWRVTSLDKSSICFTSKDSTSNCKVECKNTSPKKKNSCQPFIFLPNSIFQIEESPLQEFFGHSSDVLDLAWSNSDILLSSSMDKTVRLWQIDCNQSLSVFHHNDYVTCIQFNPVDENYFISGSIDGKVRIWGIREERVIDWANIRDVISAISYQEDGKGFIVGCVTGTCRFYVASGKYFQLEAQIDVCGKKKASGNKITGIQFSQKSCQRIMITTEDSKIHIYDGIELVQKYKGLPKSGSQMSGSFTSSGKHIISVGEDSHVYIWNLDDLGNASPKHTKSERSCEYFFSKGVTVAIPWSDVKAYQRGSSSNFSHHSSEMQTQSEIAPEIRDPDRFSLGNWFAIDGTCRGSVTWPEEKLPSWDLPIAEDKYDEQQLCHKNTCQDRIVSETWGLSIVVAACDGTIKTFHNFGLPIRF 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g03066 672 PRINTS G protein beta WD-40 repeat signature 376 390 IPR020472 -
Phco4g03066 672 PRINTS G protein beta WD-40 repeat signature 247 261 IPR020472 -
Phco4g03066 672 PRINTS G protein beta WD-40 repeat signature 334 348 IPR020472 -
Phco4g03066 672 Gene3D - 222 556 IPR015943 GO:0005515
Phco4g03066 672 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 316 349 - -
Phco4g03066 672 ProSiteProfiles Trp-Asp (WD) repeats profile. 356 398 IPR001680 GO:0005515
Phco4g03066 672 PANTHER WD REPEAT DOMAIN 44 8 669 IPR040324 -
Phco4g03066 672 SUPERFAMILY WD40 repeat-like 226 662 IPR036322 GO:0005515
Phco4g03066 672 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 228 263 - -
Phco4g03066 672 ProSiteProfiles Trp-Asp (WD) repeats profile. 228 269 IPR001680 GO:0005515
Phco4g03066 672 FunFam WD repeat-containing protein 44 212 555 - -
Phco4g03066 672 ProSiteProfiles Trp-Asp (WD) repeats profile. 316 356 IPR001680 GO:0005515
Phco4g03066 672 Pfam WD domain, G-beta repeat 227 259 IPR001680 GO:0005515
Phco4g03066 672 Pfam WD domain, G-beta repeat 352 388 IPR001680 GO:0005515
Phco4g03066 672 Pfam WD domain, G-beta repeat 311 346 IPR001680 GO:0005515
Phco4g03066 672 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 356 391 - -
Phco4g03066 672 SMART WD40_4 221 260 IPR001680 GO:0005515
Phco4g03066 672 SMART WD40_4 309 347 IPR001680 GO:0005515
Phco4g03066 672 SMART WD40_4 391 430 IPR001680 GO:0005515
Phco4g03066 672 SMART WD40_4 482 523 IPR001680 GO:0005515
Phco4g03066 672 SMART WD40_4 350 389 IPR001680 GO:0005515
Phco4g03066 672 SMART WD40_4 441 481 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g03066 Phco-Chr4 51624669 51628233 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g03066 4 51624669 51628233 Phco4g03066 4 51624669 51628233 ECH
Phco4g03066 4 51624669 51628233 Phco7g01696 7 16861823 16864954 PCT