Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g01695 ATGGTAAGAGCCAGAGACGATCTATGCATCAACGTTCCCACTTTCTTCAAGTGCCCTATTTCTCTTGATATTATGAAATCCCCTGTCAGCCTCTGCACCGGAGTCACCTACGACCGCTCCAGCATCCAACGCTGGCTCGATGCCGGCAACAACACCTGCCCCGCAACCATGCAACTCCTCCAAACAAAGGACTTCGTTCCCAACCGAACTTTACAAAGCCTCATTCAGATCTGGTCCGATTCCCTGCGCCACTCAACCGTTCCGCACCCCCTCCTATCCTCGGACCAGGTCCTCCCAACCGTCGCTCAATTGGAAACTCACTCTCTCCGCTCCGCTTCGCTCGCTAAACTGCTCCACTTCGCCAGAGATTCTAACCATAACAAACTCATCCTTGCCAAACTAGAAGGCTTCGTCAACCAACTGCTTCGTTTCCTCGACAATGTCGACGGAGGACTCGTCGCCAGTGCTAATACTCAATTTCTCCAACAAGTCATCCTTCTGTTAGGTCTGATTCTCGATAGCGTCGAAGATCGCGATGGATTGAGAAACTCTTTGCTCAAAGGAAACAAACAAAGCCTAGATTCTCTGCTTCTCGTTCTGCAACGAGGATGCTGCGAATCGAGAATCGCCTCCGCTAGGGTTCTGCAATTCATCGCCGCGGACGCGGAGTCGAAGATTTTAATCGCGGAGAAGGAAGGCGTGGTGGCCGAGTTGCTGAAGTCGGCGGCGCCGGAGAAGGATCCGGCGCTGGTCGAGGCCGCGCTGGCGAGCCTGGTCGCGATTTCGACGCCGAAGCGGAACAAGCTGAAGCTGGTGAGTCTCGGCGCGGTGAAGGCGCTGTCGAGGCTGTTGGCGGAGGCGAAGCTGGGCGCGGCGGCGATGGAGAAGGTGCTCAAGCTGGTGGAGACGGCGTCGTCGACGAGGGAGGGGCGGAAGGAGATATGCGAGGACGCGGCGTGCGTGGCGGCGGTGCTGAGCAAGGTTCTGAAGGTGTCGAGCGTGGCGACGGAGCATGCGGTGACGACGCTGTGGAGCGTGTGCTACCTGTTTCGCGATCGCAAGGCGCAGGAGGCAGTGACTCAGGCCAATGGCTTGACCAAGATTCTGCTGCTGATGCAGAGCAATTGTGCGCCGCAAGTGCGCCAAATGTGCACCGATTTGCTCAAGATTTTTCGGGTGAACTCCAAGTCATGCCTCTCCTGCTACGACACCAAGACCACGCATATCATGCCGTTTTGA 1239 0.565 MVRARDDLCINVPTFFKCPISLDIMKSPVSLCTGVTYDRSSIQRWLDAGNNTCPATMQLLQTKDFVPNRTLQSLIQIWSDSLRHSTVPHPLLSSDQVLPTVAQLETHSLRSASLAKLLHFARDSNHNKLILAKLEGFVNQLLRFLDNVDGGLVASANTQFLQQVILLLGLILDSVEDRDGLRNSLLKGNKQSLDSLLLVLQRGCCESRIASARVLQFIAADAESKILIAEKEGVVAELLKSAAPEKDPALVEAALASLVAISTPKRNKLKLVSLGAVKALSRLLAEAKLGAAAMEKVLKLVETASSTREGRKEICEDAACVAAVLSKVLKVSSVATEHAVTTLWSVCYLFRDRKAQEAVTQANGLTKILLLMQSNCAPQVRQMCTDLLKIFRVNSKSCLSCYDTKTTHIMPF 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g01695 412 ProSiteProfiles U-box domain profile. 11 85 IPR003613 GO:0004842|GO:0016567
Phco7g01695 412 SMART Ubox_2 15 78 IPR003613 GO:0004842|GO:0016567
Phco7g01695 412 PANTHER WDSAM1 PROTEIN 11 400 IPR045185 GO:0061630
Phco7g01695 412 Pfam U-box domain 12 80 IPR003613 GO:0004842|GO:0016567
Phco7g01695 412 SUPERFAMILY RING/U-box 6 80 - -
Phco7g01695 412 SUPERFAMILY ARM repeat 107 394 IPR016024 -
Phco7g01695 412 CDD RING-Ubox_PUB 13 65 IPR045210 -
Phco7g01695 412 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 87 IPR013083 -
Phco7g01695 412 FunFam RING-type E3 ubiquitin transferase 4 84 - -
Phco7g01695 412 Gene3D - 189 404 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g01695 Phco-Chr7 16822409 16823647 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g01695 7 16822409 16823647 Phco7g01695 7 16822409 16823647 ECH
Phco7g01695 7 16822409 16823647 Phco4g03064 4 51602789 51604045 ECH
Phco4g03064 4 51602789 51604045 Phco7g01695 7 16822409 16823647 PCT