Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g03064 ATGGTTAGAGACGATCTCTACATCACGGTTCCCAGCTTCTTCCGCTGCCCCATATCACTCGACGTCATGAAATCCCCTGTCAGCCTCTCCACCGGCGTTACCTACGACCGCTCCAGCATCCAACGCTGGCTCGACAACGGCAACAACACATGTCCCGCCACCATGCAGGTTCTCCAAACCAAAGAATTTGTTCCTAACCGAACCTTACAGAGGCTCATCCAGATCTGGTCCGACTCCCTCCACCACCCACTCCACTCGCCTCACTCCCCTACTTCCACCCACTCCCTATCCCTCCCCTCCAAGAACCAAATCCTCCTCGCTATCTCCGACTTGCAGACTCGCACCCACAACCGCATCGACTCGCTCGCCAAAATCTCGCGGTTCGCGCAAGATTCCGAGGAGAACCGCGATTTTCTCGTCAGAACGGAATGCTTCGTGCCGCTGCTGGTTGGCTTCCTGGACATTGTCAATGGCGGCGTCGAGTTCCTCGAACAGGTCGTTACGGCGTTGGATTTGGTTATCGGAAAAATGGAAGATCGTGAGGGGCTGAAAAACTTGATACTGAAGAGGCAGGGCGAGGGAGAAAAACAGAGCCTAGATTCTCTGTTTATCGCTCTCCAACAAGGGAGCCATGCTGCACAGATAGCATCGGTTAGGGTTTTGACTTCGGTCGCCGTGGACGTGGAATCGAAGCTGTTGATAGCGGAGAAGGAAGGTTTAGTGTCCGAATTGCTGAAACTAATCACGCCAGAAAAAGATCCGGATCTAATTGACAACTGTCTGTCGTGCCTGGTGGCGATTTCGTCTCCGAGACGGAGCAAGATGAAGCTGGTGCGTCTGGGAGCGGTTAAGGTGTTCTCAAAGCTTCTTTGGGCTTCGAACATGAGCGTGTCGGTGACGGAGAAGGTTCTGAAGCTGGTGGAAACGGTGTTTTCTACGAAGGAAGGGAGGTCGGAGATATGCGAGGATTCAGCGTGCGTGGCGGCGATAGTGAACAAGGTGCTGAAAGTTTCGAGCGTGGCAACTGAACACGCCGTTACGACGCTGTGGAGCGTGTGTTATCTGTTTCGGGATCAGACGGCGCAAGAGGCCGTTACGAATGCTAACGGCTTGACCAAGATTCTGCTTCTGATGCAGAGTAATTGCTCGCCGCAAGTGCGCCAAATGTCTGTGGATTTGCTCAAAATATTTCGGGTTAATTCTAAGTCGTGTCTTTCATCTTATGACACCAAGACCACTCATATTATGCCCTTTTGA 1257 0.5251 MVRDDLYITVPSFFRCPISLDVMKSPVSLSTGVTYDRSSIQRWLDNGNNTCPATMQVLQTKEFVPNRTLQRLIQIWSDSLHHPLHSPHSPTSTHSLSLPSKNQILLAISDLQTRTHNRIDSLAKISRFAQDSEENRDFLVRTECFVPLLVGFLDIVNGGVEFLEQVVTALDLVIGKMEDREGLKNLILKRQGEGEKQSLDSLFIALQQGSHAAQIASVRVLTSVAVDVESKLLIAEKEGLVSELLKLITPEKDPDLIDNCLSCLVAISSPRRSKMKLVRLGAVKVFSKLLWASNMSVSVTEKVLKLVETVFSTKEGRSEICEDSACVAAIVNKVLKVSSVATEHAVTTLWSVCYLFRDQTAQEAVTNANGLTKILLLMQSNCSPQVRQMSVDLLKIFRVNSKSCLSSYDTKTTHIMPF 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g03064 418 SUPERFAMILY ARM repeat 120 404 IPR016024 -
Phco4g03064 418 PANTHER WDSAM1 PROTEIN 9 406 IPR045185 GO:0061630
Phco4g03064 418 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Phco4g03064 418 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Phco4g03064 418 CDD RING-Ubox_PUB 11 63 IPR045210 -
Phco4g03064 418 Pfam U-box domain 10 77 IPR003613 GO:0004842|GO:0016567
Phco4g03064 418 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 85 IPR013083 -
Phco4g03064 418 FunFam RING-type E3 ubiquitin transferase 2 82 - -
Phco4g03064 418 Gene3D - 112 407 IPR011989 -
Phco4g03064 418 SUPERFAMILY RING/U-box 5 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g03064 Phco-Chr4 51602789 51604045 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g03064 4 51602789 51604045 Phco4g03064 4 51602789 51604045 ECH
Phco7g01695 7 16822409 16823647 Phco4g03064 4 51602789 51604045 ECH
Phco4g03064 4 51602789 51604045 Phco7g01695 7 16822409 16823647 PCT