Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g01673 ATGGACTTTGACGAGTACGATTACTTGGAGAAGACAGTGGAGGAACAAGAGGACCGCGACTCAAGCAGGAAGAAGAAAGAGACTGAAAGGAGCTACAGGAAGCGCGACGGGATCGACGACGGCTCCGAAGAGAGGAAGAGCAAGAGGTCAAGGGGAGACGATGAGAATGGCTCCAGGAAGGATAGAGATCGCGAAGAGCGCGACAGGGAGCGCGACAGAAGTAGCAGGGATAGAGATAGAGACAGAGATGGCGAGAGAAGTAGCAGGGATAGAGATAGAGACAGAGATGGCGATGGAAGTAGCAGGGACATGAACAGAGACAGAGATAGGGATCGGAGGGACAGAGACAAAGAGAGGGAGAAGAGGGAGAGGGAAAGGGACAGAGATAGGGAAGGAGAAAGAGACAGAGATAGAGACCGAAGGGACAAAGAACGGGAAGAGAGAGAGAGGTCTCGGAGGAGCAGGAGTCGTTCTGAGCGAGATAGAGAAAGAGATACCAGGGAACGGGATTTCGACACCAGAGATACCAGGAGATTTAGGGACAAGAAAGATGCAACGGAGCCTGAGGCAGATCCAGAAAGGGACCAGAGGACTGTTTTTGCATACCAGATGCCCTTAAAGGCGTCAGAGAGGGATGTGTATGAATTCTTCTCAAAAGCTGGCAAGGTAAGGGATGTCCGTCTAATCATGGATAGGAACTCAAGGCGATCTAAAGGAGTTGGGTACATTGAATTTTATGATGCAATGTCAGTGCCAATGGCAATTGCTCTCTCAGGCCAACTTCTTCTGGGACAACCTGTAATGGTCAAACCTTCTGAGGCTGAAAAGAACCTTGTCCAATCTAATGCTACCAGTGGAGCTGCTGGGGTAGTAGGACCATATGGAGCTGTGGACAGGAAACTGTATGTGGGGAACCTTCACTTCAATATGACAGAGAGTCAACTGAGAGAGATTTTTGAGCCATTTGGTCCAGTGGAGCTTGTGCAACTGCCTCTTGACTTGGAGACGGGACATTGCAAGGGCTTTGGGTTTGTTCAATTTGCCCATCTTGAGCATGCCAAGGCTGCTCAGAGTTTAAACGGAAAGCTGGAAATTGCTGGCAGGACTATAAAGGTTTCATCTGTAACAGATCATGTTGGAAACCAAGATACAACTGCAAAATCTGCAGACTTTGATGATGATGAAGGTGGATTGGCTTTAAATGCCCAATCAAGAGCATTGCTTATGCAGAAACTGGACCGCTCTGGCATTGCTGCAAGCATTGGTCTTCCTGTTGGGAATGGGTCAGCTCCTGCTCAACAGGCTATGATGCCTATTGGTAATCCAGGCGTAATACCAGCACCAACTGTCCCAACGCAAGTTGTGCCTACCCCAGTGATTGAACCTGTTGGAAACCCCAGTGAGTGTTTACTGTTGAAGAATATGTTTGATCCAAACACTGAGACAGAGCCAGATTTTGATCTAGACATTAAAGAGGATGTGGAAGAAGAGTGTTCCAAATATGGACGGGTGAAGCATATTTATGTTGACAAAAGAAGTACAGGTTTTGTGTATTTGCAGTTTGAAACAGTCGAAGCAGCTAGTGCTGCTCAACGTGCAATGCACACAAGGTGGTTTGCAGGAAGAATGATTTCTGCTATCTATATGCAACCTCAGATTTACGAAGCCAAGTTTAAAGGGGACGCTTGA 1689 0.4754 MDFDEYDYLEKTVEEQEDRDSSRKKKETERSYRKRDGIDDGSEERKSKRSRGDDENGSRKDRDREERDRERDRSSRDRDRDRDGERSSRDRDRDRDGDGSSRDMNRDRDRDRRDRDKEREKRERERDRDREGERDRDRDRRDKEREERERSRRSRSRSERDRERDTRERDFDTRDTRRFRDKKDATEPEADPERDQRTVFAYQMPLKASERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNATSGAAGVVGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGPVELVQLPLDLETGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHVGNQDTTAKSADFDDDEGGLALNAQSRALLMQKLDRSGIAASIGLPVGNGSAPAQQAMMPIGNPGVIPAPTVPTQVVPTPVIEPVGNPSECLLLKNMFDPNTETEPDFDLDIKEDVEEECSKYGRVKHIYVDKRSTGFVYLQFETVEAASAAQRAMHTRWFAGRMISAIYMQPQIYEAKFKGDA 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g01673 562 FunFam Splicing factor CC1-like 121 282 - -
Phco7g01673 562 CDD RRM1_RBM39_like 198 270 - -
Phco7g01673 562 Gene3D - 464 561 IPR012677 -
Phco7g01673 562 SUPERFAMILY RNA-binding domain, RBD 299 376 IPR035979 GO:0003676
Phco7g01673 562 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 197 274 IPR000504 GO:0003723
Phco7g01673 562 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 205 266 IPR000504 GO:0003723
Phco7g01673 562 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 301 371 IPR000504 GO:0003723
Phco7g01673 562 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 491 544 IPR000504 GO:0003723
Phco7g01673 562 SMART rrm1_1 469 547 IPR000504 GO:0003723
Phco7g01673 562 SMART rrm1_1 300 373 IPR000504 GO:0003723
Phco7g01673 562 SMART rrm1_1 198 270 IPR000504 GO:0003723
Phco7g01673 562 FunFam Splicing factor, CC1-like protein 463 562 - -
Phco7g01673 562 CDD RRM3_RBM39_like 467 549 - -
Phco7g01673 562 SUPERFAMILY RNA-binding domain, RBD 465 550 IPR035979 GO:0003676
Phco7g01673 562 NCBIfam splicing factor, CC1-like family 79 558 IPR006509 GO:0003723|GO:0005634|GO:0006397
Phco7g01673 562 Gene3D - 190 283 IPR012677 -
Phco7g01673 562 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 299 377 IPR000504 GO:0003723
Phco7g01673 562 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 558 IPR006509 GO:0003723|GO:0005634|GO:0006397
Phco7g01673 562 FunFam Splicing factor CC1-like 283 388 - -
Phco7g01673 562 CDD RRM2_RBM23_RBM39 301 378 - -
Phco7g01673 562 MobiDBLite consensus disorder prediction 12 196 - -
Phco7g01673 562 MobiDBLite consensus disorder prediction 1 198 - -
Phco7g01673 562 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 392 486 IPR029123 -
Phco7g01673 562 Gene3D - 295 391 IPR012677 -
Phco7g01673 562 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 473 551 IPR000504 GO:0003723
Phco7g01673 562 SUPERFAMILY RNA-binding domain, RBD 190 278 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g01673 Phco-Chr7 16502880 16509400 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g03037 4 51423881 51430558 Phco7g01673 7 16502880 16509400 ECH
Phco7g01673 7 16502880 16509400 Phco7g01673 7 16502880 16509400 ECH
Phco4g03037 4 51423881 51430558 Phco7g01673 7 16502880 16509400 PCT