Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g03037 ATGGACTTCGACGAGTACGAATACCTGGAGAAGACAGTGGAGGAAGATGTAGATTCCACCAAGAAGAAGAAGGAGAACACCGACAAGATCGAGAGAAGTTACAGGAAGCGCGACGTCGACGATGATCTCCACGCCGACGAGAGGAGGAGCAAGAGGAGGGGCGACGACGACAACGGTGGTTCCAAGAAAGATCGTGACAGAGACAGGGATAGGGACAAGGACCGGGAACGTGACCGTTCCTCCGGCCGTCACAGGAGCGAGAGGGAGAGAGATGGAGAGAAGAAAGAGAGGGATAAGGATAGGGAGAGGAGGGATAAGGATAAGGATAAGGATAAGGACAAGGATAGGAGAGATCGTGATAGGGATAAGGAAAAGGAGCGCGAGAGAAGAGAGAGGGATAAGGAGCGAGAGGAGAGAGAGAGATCCAGAAGGAGCAGGAGTCGCTCCGAGAGAGACAGAGGAGACAGAGACCGGGAGCGAGATTTCGAAATGCGCGATGGACGGAGATTTAGGGATAAGAAAGAGGCTGTGGAACCGGAGGCAGATCCAGAAAGGGACCAGAGAACTGTTTTTGCCTACCAGATGCCATTAAAAGCAACAGAGAGAGACGTGTACGAGTTTTTCTCAAAAGCTGGCAAGGTGAGAGATGTCCGTCTGATTATGGATAGGAATTCAAGACGATCCAAAGGAGTTGGGTATATTGAATTTTATGATGCAATGTCAGTGCCAATGGCTATTGCTCTCTCTGGTCAACTTCTTCTTGGACAACCTGTAATGGTGAAACCTTCTGAAGCTGAAAAGAACCTTGTTCAATCTAACGCTTCTGGTGGAGCGGCTGGTGTAGCGGGTCCTTATGGAGCTGTGGACAGAAAATTGTATGTGGGAAATCTTCACTTCAACATGACTGAGAGTCAGCTACGGGAGATTTTTGAGCCATTTGGTCCTGTTGAAGTTGTCCAACTGCCGCTTGACTTGGAAACAGGCCACTGCAAGGGTTTTGGGTTTGTTCAATTTACCCATCTTGAACATGCCAAGGCTGCTCAGAGTTTAAATGGAAAATTGGAGATTGCTGGCAGGACTATCAAGGTCTCATGTGTAACGGATCATGTTGGAAGCCAAGATACCACTGCAAAATCTGCAGACTTAGATGACGATGAAGGTGGATTGACTTTAAATGCTCACTCAAGAGCACTGCTTATGCAGAGGCTGGCTGGTGCTGACATTTCTGCAAGCATGGGTATGCCTGTTTTGAATGGCTCAGTTCCTGCTCAGCAGGCTGTTAGTTTACCTATTGGTGCACCAGTTCTACCAGCACAAGTTATGCCTACCCCAGTGGGAGAACCTGTAGGAAGCCCCAGCGAGTGTTTACTTTTAAAGAATATGTTTGATCCTACCACTGAGTCAGAACCAGATTTTGATATAGACATTAAAGAAGATGTAGAGGAAGAGTGTTCTAAATATGGCCGGGTGAAGCATATTTTTGTTGACAAAAAAAGTGCAGGTTTTGTCTATTTGCGATTTGAAACAGTGGAAGCAGCAAGTGCTGCTCAACGTGCAATGCACATGAGATGGTTTGCACGCAGGTTAATTTCAGCAATCTTCATGCAACCACAATTATATGAAGCCAAGTTTAAAGGGGAGTGA 1644 0.4708 MDFDEYEYLEKTVEEDVDSTKKKKENTDKIERSYRKRDVDDDLHADERRSKRRGDDDNGGSKKDRDRDRDRDKDRERDRSSGRHRSERERDGEKKERDKDRERRDKDKDKDKDKDRRDRDRDKEKERERRERDKEREERERSRRSRSRSERDRGDRDRERDFEMRDGRRFRDKKEAVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNASGGAAGVAGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDLETGHCKGFGFVQFTHLEHAKAAQSLNGKLEIAGRTIKVSCVTDHVGSQDTTAKSADLDDDEGGLTLNAHSRALLMQRLAGADISASMGMPVLNGSVPAQQAVSLPIGAPVLPAQVMPTPVGEPVGSPSECLLLKNMFDPTTESEPDFDIDIKEDVEEECSKYGRVKHIFVDKKSAGFVYLRFETVEAASAAQRAMHMRWFARRLISAIFMQPQLYEAKFKGE 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g03037 547 SMART rrm1_1 455 532 IPR000504 GO:0003723
Phco4g03037 547 SMART rrm1_1 291 364 IPR000504 GO:0003723
Phco4g03037 547 SMART rrm1_1 189 261 IPR000504 GO:0003723
Phco4g03037 547 MobiDBLite consensus disorder prediction 13 160 - -
Phco4g03037 547 FunFam Splicing factor CC1-like 273 379 - -
Phco4g03037 547 Gene3D - 450 547 IPR012677 -
Phco4g03037 547 Gene3D - 181 275 IPR012677 -
Phco4g03037 547 MobiDBLite consensus disorder prediction 1 160 - -
Phco4g03037 547 SUPERFAMILY RNA-binding domain, RBD 290 537 IPR035979 GO:0003676
Phco4g03037 547 CDD RRM1_RBM39_like 189 261 - -
Phco4g03037 547 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 544 IPR006509 GO:0003723|GO:0005634|GO:0006397
Phco4g03037 547 Coils Coil 120 145 - -
Phco4g03037 547 Gene3D - 286 382 IPR012677 -
Phco4g03037 547 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 383 472 IPR029123 -
Phco4g03037 547 FunFam Splicing factor CC1-like 111 272 - -
Phco4g03037 547 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 290 368 IPR000504 GO:0003723
Phco4g03037 547 NCBIfam splicing factor, CC1-like family 71 544 IPR006509 GO:0003723|GO:0005634|GO:0006397
Phco4g03037 547 SUPERFAMILY RNA-binding domain, RBD 181 274 IPR035979 GO:0003676
Phco4g03037 547 CDD RRM3_RBM39_like 453 535 - -
Phco4g03037 547 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 195 257 IPR000504 GO:0003723
Phco4g03037 547 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 477 530 IPR000504 GO:0003723
Phco4g03037 547 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 292 362 IPR000504 GO:0003723
Phco4g03037 547 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 188 265 IPR000504 GO:0003723
Phco4g03037 547 FunFam Splicing factor, CC1-like protein 449 547 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g03037 Phco-Chr4 51423881 51430558 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g03037 4 51423881 51430558 Phco7g01673 7 16502880 16509400 ECH
Phco4g03037 4 51423881 51430558 Phco4g03037 4 51423881 51430558 ECH
Phco4g03037 4 51423881 51430558 Phco7g01673 7 16502880 16509400 PCT