Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g01669 ATGATGAACAGTACCGCATTGTCAAGGCTATTTCCGGGCATGAATAGGGAGAGAGAGATGTCTGCTATGGTCTCAGCTTTGACCCACGTTGTCACCGGAGAGGTTCCGACAACCACTGATTCTGTCTCACCTGACGTGCCTTCTTCTGCTTCTACAACACCCTCTTTACCTTCTTCTTCATCTAATTATATTCTTGCCACCTCTTCTAACAAGAGAACTAGGGAACAAGACACACCATGCTTCTCGCAAGCCTCTTCTATACCAAAAAGTGGAGAATGTTCAAACAATTCGAGAAGCAGAATAAGAAGGGAAATGGGAAATGCTGTGTATGAATACAGGACAACAGAGAATGTGAGGAGGGATGAGGAGAGGAGGAAATACAGAGGAGTGAGGCAGAGGCCGTGGGGGAAATGGGCGGCGGAGATAAGAGATCCGTTCAAGGCGGCGAGGGTGTGGTTAGGGACGTTTGACACGGCGGAGGCAGCTGCTAGAGCATACGATGAAGCTGCTCTTCGATTTAGAGGAAACAAGGCGAAACTGAACTTTCCAGAGAATGTCACTCTCCGGCAACCTGAGTTTAGTGTTTCCAATTCTGCGACTTCTCTTGCGTCCATTTCAACGTCCACGGATCAAGTTGTGCACACTCCATCTTTTCTCCCTTCTCAAGCTGCGACCAACGTTTACGAGTATTTTCAGCTCTCGGGCTACCCCACCGGCCTTTATAATGACAGGACGCTTGTCACGTCTTCCATGGCTTCTCATCTTCACTCTTCTTCCTCTTCTTCTGCGTTTGTATCTTCTTCGCAGGACACTTCACTTTCTTCCTTTTATTCTAGCCAGATTCCACCACCTTGGTCAGCTTCTGCTCCTAGCTCTTCTTCCTCAGGATGA 891 0.4815 MMNSTALSRLFPGMNREREMSAMVSALTHVVTGEVPTTTDSVSPDVPSSASTTPSLPSSSSNYILATSSNKRTREQDTPCFSQASSIPKSGECSNNSRSRIRREMGNAVYEYRTTENVRRDEERRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFDTAEAAARAYDEAALRFRGNKAKLNFPENVTLRQPEFSVSNSATSLASISTSTDQVVHTPSFLPSQAATNVYEYFQLSGYPTGLYNDRTLVTSSMASHLHSSSSSSAFVSSSQDTSLSSFYSSQIPPPWSASAPSSSSSG 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g01669 296 SMART rav1_2 126 189 IPR001471 GO:0003700|GO:0006355
Phco7g01669 296 MobiDBLite consensus disorder prediction 273 296 - -
Phco7g01669 296 SUPERFAMILY DNA-binding domain 126 184 IPR016177 GO:0003677
Phco7g01669 296 CDD AP2 126 185 IPR001471 GO:0003700|GO:0006355
Phco7g01669 296 ProSiteProfiles AP2/ERF domain profile. 126 183 IPR001471 GO:0003700|GO:0006355
Phco7g01669 296 PRINTS Ethylene responsive element binding protein signature 127 138 IPR001471 GO:0003700|GO:0006355
Phco7g01669 296 PRINTS Ethylene responsive element binding protein signature 149 165 IPR001471 GO:0003700|GO:0006355
Phco7g01669 296 Pfam AP2 domain 126 175 IPR001471 GO:0003700|GO:0006355
Phco7g01669 296 Gene3D AP2/ERF domain 125 185 IPR036955 GO:0003700|GO:0006355
Phco7g01669 296 PANTHER DNA-BINDING DOMAIN 78 263 IPR044808 GO:0003700|GO:0009873
Phco7g01669 296 MobiDBLite consensus disorder prediction 35 62 - -
Phco7g01669 296 FunFam Ethylene-responsive transcription factor 2 125 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g01669 Phco-Chr7 16409940 16410995 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Phco7g01669 AP2 3.3e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g01669 7 16409940 16410995 Phco7g01669 7 16409940 16410995 ECH
Phco4g03035 4 51408172 51409339 Phco7g01669 7 16409940 16410995 ECH