Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g03035 ATGGCGAATCACAGAGAACAGGGTAACGAGGGTGATCGGAGTGAAGCGAGAGACTGTGATTCGTTGTCAATGCCAATGATGCTTTCGGGGTTGAATAGGGAGAGGGAGATGTCAGCCATGATCTCTGTTTTGACTCAAGTTGTTCGTGGAGAGGATCATAGTCACGATCATTCTCTTCTTCATGGAAACATTGATAACAGTGCAATTGGTGGTGGCTCTGCATGTTCATCTTATTATGGAAACTCTGTTCTGAAGAGAAGGAGGGAAGGTGACGATACAAGTGATCTCCCACGTGGAACTTCATTCCATGCTGTTTCGACATATGGAGATGGTGAAAGTTCAAGCAGGGTGACAAGAAGGGAAACGAGAGAAATGGAGAATAGGGCGTACGATTACGAGTACAGGGGAGAGAGGCCGAGAGTGGAAGAGGAACCAAAGAGGAAATACAGAGGAGTGAGGCAGAGACCATGGGGGAAATGGGCTGCGGAAATAAGGGACCCATTCAAGGCTGCTAGAGTGTGGTTAGGAACATTTCAGACAGCTGAGGATGCGGCCAGAGCCTACGATGAAGCTTCCTTACGTTTCAGAGGCAACAAAGCCAAACTCAACTTCCCTGAAAATGTGAGGCTCAGAAACCAGTCACAGCCACCACCAATCACCCATTTCACCGCACCCCTTTTCTCAATTCCGTCTACGACTGAACCCATTGTTCACACTCAGGCTCAGGCTCAGGCTCAGGGTTCACATGATTCCGGCCACTTTTACGATTATTGTTATTCGCGTGTTCATGAATGTCCCGTGAGCCTCTATGACCAGGTTGCCATGTCATCATCATTCTCTATGGCGGCTTCTCATCTTCAATCTTCACCTTCCTATTCTTCTTCCTCAACTATCACTTCTCCCCAACCACCTCCTCTTCTTCCTCCCCCTTATGCTACGCAACTACCCCCATGCTCTTCTTCTTCCTCTTCTGCTGCTGCTTACACAAGCACCTCCCATCCTTCCACCAAATAG 1014 0.4842 MANHREQGNEGDRSEARDCDSLSMPMMLSGLNREREMSAMISVLTQVVRGEDHSHDHSLLHGNIDNSAIGGGSACSSYYGNSVLKRRREGDDTSDLPRGTSFHAVSTYGDGESSSRVTRRETREMENRAYDYEYRGERPRVEEEPKRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFQTAEDAARAYDEASLRFRGNKAKLNFPENVRLRNQSQPPPITHFTAPLFSIPSTTEPIVHTQAQAQAQGSHDSGHFYDYCYSRVHECPVSLYDQVAMSSSFSMAASHLQSSPSYSSSSTITSPQPPPLLPPPYATQLPPCSSSSSSAAAYTSTSHPSTK 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g03035 337 CDD AP2 148 207 IPR001471 GO:0003700|GO:0006355
Phco4g03035 337 Pfam AP2 domain 148 197 IPR001471 GO:0003700|GO:0006355
Phco4g03035 337 SUPERFAMILY DNA-binding domain 148 206 IPR016177 GO:0003677
Phco4g03035 337 PANTHER DNA-BINDING DOMAIN 118 276 IPR044808 GO:0003700|GO:0009873
Phco4g03035 337 MobiDBLite consensus disorder prediction 289 337 - -
Phco4g03035 337 ProSiteProfiles AP2/ERF domain profile. 148 205 IPR001471 GO:0003700|GO:0006355
Phco4g03035 337 MobiDBLite consensus disorder prediction 1 19 - -
Phco4g03035 337 MobiDBLite consensus disorder prediction 316 337 - -
Phco4g03035 337 MobiDBLite consensus disorder prediction 1 24 - -
Phco4g03035 337 Gene3D AP2/ERF domain 147 207 IPR036955 GO:0003700|GO:0006355
Phco4g03035 337 MobiDBLite consensus disorder prediction 301 315 - -
Phco4g03035 337 SMART rav1_2 148 211 IPR001471 GO:0003700|GO:0006355
Phco4g03035 337 PRINTS Ethylene responsive element binding protein signature 149 160 IPR001471 GO:0003700|GO:0006355
Phco4g03035 337 PRINTS Ethylene responsive element binding protein signature 171 187 IPR001471 GO:0003700|GO:0006355
Phco4g03035 337 MobiDBLite consensus disorder prediction 88 124 - -
Phco4g03035 337 FunFam Ethylene-responsive transcription factor 2 147 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g03035 Phco-Chr4 51408172 51409339 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Phco4g03035 AP2 1.7e-13 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g03035 4 51408172 51409339 Phco4g03035 4 51408172 51409339 ECH
Phco4g03035 4 51408172 51409339 Phco7g01669 7 16409940 16410995 ECH