Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g01333 ATGGTTGGCCAGGATAATCTAAGGACTGAGGACTTGAACTTGTGCTTTGAGAGGCTTATGATGGTGGCTGGGAGTGGGAACAGTGAGAAAGGGATGAACTTGAAGGTTGGGGTGATTACAGAATGGAAGGATATTCCTATGGAACTTTTGATGCAAATTTTGTCCCTTGTGGATGATCAGACGGTGATCATCGCTTCTGGAGTTTGTCGTGGATGGAGAGATGCTATTTACTTTGGCCTTGCTCGTTTATCACTCTCATGGTGTAGCAAGAACATGAATAGCTTGGTCCTATCAATTGTTCCTAAATTCACAAAACTGCAAACTCTAATCCTTCGTCAACACAAGCCTCAACTAGAGGATAAAGCTGTTGAGACTATTGCAGACTGCTGTCATGAATTGCAGATCCTGGACCTCAGCAAAAGCTTCAAGCTAACTGATCGTTCACTTTATGCTATTGCATTCGGTTGTCGCGATCTTACAAAACTCAACATCAGTGGGTGTTCAGCATTTAGTGACGGTGCTCTGGCTTACCTTGCCAGTTTCTGCAGAAAACTGAAAGTTCTAAATCTTTGTGGTTGTGTTAGAGCTGCATCTGATACTGCATTGCAGGCTATTGGACAGTACTGCAATCAGTTACAATCTTTGAACCTTGGATGGTGTGATTATGTTGGTGATGTTGGAGTGACTACTTTAGCATATGGGTGCCCTGATCTTAGGATAGTTGACTTGTGTGGCTGTGTCCGTATAACAGATGATAGTGTGATTGCTTTGGCTAACAGATGCCCCCATCTGAGGTCTCTTGGACTGTACTACTGCAAGAACATCACAGACAGAGCAATGTATTCTTTGGCACACAGCAAGGTGAATAACAGGATATCTGTGAAAGGAGGAAATGATGAGGATGGGTTAAGGACTTTGAACATCAGCCAATGCACTGCACTCACCCCATCTGCGGTTCAAGCGGTTTGTGACTCATTCCCATCTCTCCACACATGCTCAGGGAGGCACTCTCTTATCATGAGTGGCTGCCTCAACTTGACCTCTGTGCATTGTGCCTGTGCTGTCCATGCACACCGTGCATTCACCCATTTCCCTCATCCAGCTCATTAA 1110 0.4486 MVGQDNLRTEDLNLCFERLMMVAGSGNSEKGMNLKVGVITEWKDIPMELLMQILSLVDDQTVIIASGVCRGWRDAIYFGLARLSLSWCSKNMNSLVLSIVPKFTKLQTLILRQHKPQLEDKAVETIADCCHELQILDLSKSFKLTDRSLYAIAFGCRDLTKLNISGCSAFSDGALAYLASFCRKLKVLNLCGCVRAASDTALQAIGQYCNQLQSLNLGWCDYVGDVGVTTLAYGCPDLRIVDLCGCVRITDDSVIALANRCPHLRSLGLYYCKNITDRAMYSLAHSKVNNRISVKGGNDEDGLRTLNISQCTALTPSAVQAVCDSFPSLHTCSGRHSLIMSGCLNLTSVHCACAVHAHRAFTHFPHPAH 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g01333 369 Pfam F-box domain 42 76 IPR001810 GO:0005515
Phco7g01333 369 PANTHER UNCHARACTERIZED 79 333 - -
Phco7g01333 369 SMART LRR_CC_2 130 155 IPR006553 -
Phco7g01333 369 SMART LRR_CC_2 103 129 IPR006553 -
Phco7g01333 369 SMART LRR_CC_2 156 181 IPR006553 -
Phco7g01333 369 SMART LRR_CC_2 235 260 IPR006553 -
Phco7g01333 369 SMART LRR_CC_2 209 234 IPR006553 -
Phco7g01333 369 SMART LRR_CC_2 261 286 IPR006553 -
Phco7g01333 369 SMART LRR_CC_2 182 208 IPR006553 -
Phco7g01333 369 SMART LRR_CC_2 300 325 IPR006553 -
Phco7g01333 369 Pfam Leucine Rich repeat 261 284 IPR001611 GO:0005515
Phco7g01333 369 Pfam Leucine Rich repeat 209 232 IPR001611 GO:0005515
Phco7g01333 369 SUPERFAMILY F-box domain 42 78 IPR036047 GO:0005515
Phco7g01333 369 Gene3D - 39 80 - -
Phco7g01333 369 CDD F-box_AtSKP2-like 41 88 - -
Phco7g01333 369 SUPERFAMILY RNI-like 79 350 - -
Phco7g01333 369 Gene3D Ribonuclease Inhibitor 81 301 IPR032675 -
Phco7g01333 369 FunFam F-box protein SKP2A isoform A 81 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g01333 Phco-Chr7 12021799 12024411 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g01333 7 12021799 12024411 Phco7g01333 7 12021799 12024411 ECH
Phco2g00752 2 8071572 8075087 Phco7g01333 7 12021799 12024411 PCT