Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g01304 ATGTGTCTCCTAAGCCAATCTGAGTTGAAGCGTATTTTTGAGAAAGTGGACGTGAATGGCGATGGGTTCGTGAGCCTTGAGGAGCTCAATCGGATGCTTCAAATGACAGGTAATTCCCACTACACCATACAAGAGTTGGAATCGCTGGTGGAAAACCAGAGCCTTGATTTCAGCCAGTTCTTGTTCTTTTACAACTCCGTTTCGGAGCAGCAGAATGGAGAAAGTAGAGGAAGTGGCGGTGACACAGAGGAATTGGAGTTGGAGAGCGACCTGATCAAAACCTTCAGGGTGTTTGACTTGGATGGAGATGGGTTCATCACCAGCCATGAGCTTGAGTCTGTGTTGAAAAGGCTTGGCATGTGGGATGAAACCAATTGCAATGATTCTAGAACCATGATTCGATTCTATGACACCAACTTCGATGGTCGTCTTGATTTTCAGGAGTTCAAGAATATGATGTTGGTTTCCAAAGCCTGA 477 0.4549 MCLLSQSELKRIFEKVDVNGDGFVSLEELNRMLQMTGNSHYTIQELESLVENQSLDFSQFLFFYNSVSEQQNGESRGSGGDTEELELESDLIKTFRVFDLDGDGFITSHELESVLKRLGMWDETNCNDSRTMIRFYDTNFDGRLDFQEFKNMMLVSKA 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g01304 158 CDD EFh 90 153 IPR002048 GO:0005509
Phco7g01304 158 Pfam EF-hand domain pair 89 153 IPR002048 GO:0005509
Phco7g01304 158 ProSiteProfiles EF-hand calcium-binding domain profile. 4 39 IPR002048 GO:0005509
Phco7g01304 158 ProSiteProfiles EF-hand calcium-binding domain profile. 86 121 IPR002048 GO:0005509
Phco7g01304 158 SMART efh_1 8 36 IPR002048 GO:0005509
Phco7g01304 158 SMART efh_1 128 156 IPR002048 GO:0005509
Phco7g01304 158 SMART efh_1 90 118 IPR002048 GO:0005509
Phco7g01304 158 Pfam EF hand 8 35 IPR002048 GO:0005509
Phco7g01304 158 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 72 153 - -
Phco7g01304 158 Gene3D - 79 158 - -
Phco7g01304 158 Gene3D - 4 65 - -
Phco7g01304 158 ProSitePatterns EF-hand calcium-binding domain. 17 29 IPR018247 -
Phco7g01304 158 FunFam Calmodulin A 3 156 - -
Phco7g01304 158 SUPERFAMILY EF-hand 7 154 IPR011992 -
Phco7g01304 158 ProSitePatterns EF-hand calcium-binding domain. 99 111 IPR018247 -
Phco7g01304 158 ProSiteProfiles EF-hand calcium-binding domain profile. 124 158 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g01304 Phco-Chr7 11700138 11700614 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g01304 7 11700138 11700614 Phco7g01304 7 11700138 11700614 ECH
Phco2g00770 2 8412941 8413423 Phco7g01304 7 11700138 11700614 PCT