Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00770 ATGTGTCCTCTAACACGAAGTGATTTGCAGCGGATTTTTGAGAAAGTGGACATGAATGGAGATGGGATTTTGAGCCTTGAGGAGCTGAACATGCTGCTAGAGAAGACGGGCTTCAAGTACAGCATTGAGGAGTTGGAGTCTCTGGTGGGAAAGAAGAGCCTTGACTTGAGTGAGTTCTTGATGTTTTATGAATCTATGCTGAAGCAAAACAATGGGGAGGAAGAAGGGAGTGATCGGGGTGATGGTGATGATGAGGTTGAGGAGGAGGAGAGGGACCTTGTGAAGACTTTCAAAGTGTTTGATTTGGATGGTGATGGGTTCATCACAAGCCAAGAACTTGAGTGTGTGTTGAAGAGGCTTGGCCTGTGGGATGAAAGGTGTGGCAAGGATAGCACAACCATGATTTGCTCTTATGACACTAATTTTGATGGCAAGCTTGATTTTCAGGAATTTAAGGACATGATGCTTCTCACAACTTCGTGA 483 0.4493 MCPLTRSDLQRIFEKVDMNGDGILSLEELNMLLEKTGFKYSIEELESLVGKKSLDLSEFLMFYESMLKQNNGEEEGSDRGDGDDEVEEEERDLVKTFKVFDLDGDGFITSQELECVLKRLGLWDERCGKDSTTMICSYDTNFDGKLDFQEFKDMMLLTTS 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00770 160 Gene3D - 5 70 - -
Phco2g00770 160 ProSitePatterns EF-hand calcium-binding domain. 101 113 IPR018247 -
Phco2g00770 160 ProSiteProfiles EF-hand calcium-binding domain profile. 126 160 IPR002048 GO:0005509
Phco2g00770 160 Gene3D - 124 160 - -
Phco2g00770 160 Pfam EF hand 9 32 IPR002048 GO:0005509
Phco2g00770 160 Pfam EF hand 138 155 IPR002048 GO:0005509
Phco2g00770 160 Pfam EF hand 93 114 IPR002048 GO:0005509
Phco2g00770 160 ProSiteProfiles EF-hand calcium-binding domain profile. 88 123 IPR002048 GO:0005509
Phco2g00770 160 ProSitePatterns EF-hand calcium-binding domain. 17 29 IPR018247 -
Phco2g00770 160 SMART efh_1 92 120 IPR002048 GO:0005509
Phco2g00770 160 SMART efh_1 130 158 IPR002048 GO:0005509
Phco2g00770 160 SMART efh_1 8 36 IPR002048 GO:0005509
Phco2g00770 160 Gene3D - 82 123 - -
Phco2g00770 160 FunFam Probable calcium-binding protein CML44 5 66 - -
Phco2g00770 160 FunFam Probable calcium-binding protein CML44 67 158 - -
Phco2g00770 160 ProSiteProfiles EF-hand calcium-binding domain profile. 4 39 IPR002048 GO:0005509
Phco2g00770 160 SUPERFAMILY EF-hand 6 157 IPR011992 -
Phco2g00770 160 CDD EFh 93 155 IPR002048 GO:0005509
Phco2g00770 160 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 10 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00770 Phco-Chr2 8412941 8413423 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g00770 2 8412941 8413423 Phco2g00770 2 8412941 8413423 ECH
Phco2g00770 2 8412941 8413423 Phco7g01304 7 11700138 11700614 PCT