Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g01272 ATGGGGCGTCCTTTGAAGAATGAAGAGAAAGGAAAGAGTGTTAAGGCTAATAGAAAAGCAGCGTTTGAAGCACGCGCGAGGGAAGCAAAGGCGCCAGAATATTACCCTACACGGCCTTCCACTGTGGTTCCGGTAACAGCCACAAAAACGCACACCAACACTGTGTTTTGCCCCCAAACGCCAACCATTTTTTTTCCTCGTCGATCACACATCACACATCCATCCAGCACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATCTTCCAACTCAAAAATATTTCTTCCAACAACAATCCCAACCCTTTGCGCCAATCAACGACCCCACACTCAAATCTTTCCCACAATTTTCTCTCTCTCTCTCTCTCTCCCTTAAACCCCTCTCTCCTCTTGCCATGCCAGCTTCTCCTTCAGAGAACCGAACCAGATGGAGGAAGCGCAAGAGAGATTCGCAAATCGCTCGGCGCCACTCCAAGCACGAGGAGGAGGAGGAGGAAGACGAAGAAAATCCCAATGCGGAGGACGACCATGCGGAACGCGAGTACGATTCCGAAGAACAAACGCACCACCACCAAAACCACCCTAATTCGCAACCTCACGTGGAGACGGAGGTCCTCTCCGACCATGGCGTGCTCATTTCGCAGTTCCCGGCGGTGGTAAAGCGCTCCGTGAACCGCCCTCACTCTTCCGTCACCGCAATCGTGGCTCTGGAGCGAGCCCTTGAGTCTGGAGACAACAAGGCTCAGAGCGCTCTCACTCCTCCTGTTCTCGAAAACGTGTCTTATGGCCAGCTTCAAGCGCTGTCGTCTGTGCCGTCTGATAATTTCGCTTTTGACGGTGATTCCTCTTTTGTCATCACTCCCCCTGCCATATTGGAAGGTCGTGGCGTTGTTAAGCGCTTTGGAGCTAAGGTTCTTGTAGTTCCAATGCATTCAGATTGGTTTTCGCCTGCTACCGTGCATAGGTTAGAGAGGCAAGCAGTGCCGCATTTCTTTTCAGGGAAATCACCGGATCATACTCCGGAGAAGTACATGGAGTGTAGGAACTGCATTGTTGCGTTGCATTTGGAGGAGCCTGGGAAGAGGATTACGGTTTCTGATTGCCAGGGTTTGTTGACTGGGGTTGATGTTGAAGATTTGACTCGGATTGTCAGGTTCCTTGATCATTGGGGAATTATTAATTACTGTGTTCAGTTGCCGAGTCTCGAGTCTCCCAATGTTATGTCTTGCCTGAGGGAGGAGCCTGGTGGAGAGGTCCGTGTGCCGGCAGAGGCTTTGAAATCTATTGATAGTTTGATCAAATTTGACAATCCCATCTGTAAGATGAAAGCAGCCGAAATTTATTCGTCATTGACTGCACACAATGCCGATTTCTTTGATCTGGAGGACAGAATAAGAGAGCATCTATCGGAGAATCATTGCAATTATTGTTCTCGTCCTCTTCCTGTTGTATACTACCAGTCTCAAAAAGAGGTTGATATTTTACTCTGCACTGATTGCTTTCATGATGGGAGATTTGTCATTGGTCATTCAAGTATAGATTTTTTAAGGGTGGATTCGACAAGGGATTATGGGGAACTAGACGGAGATAATTGGACTGATCAAGAAACTTTACTGCTTCTTGAAGCAATGGAGATTTACAATGAGAATTGGAACGAAATTGCTGAGCATGTTGGTACCAAGTCAAAAGCACAGTGCATTCTTCATTTTCTCCGTCTACCCATGGAAGATGGAAAATTGGAAAATATTAATGTTCCAAGCACCTCTGTGTCATCCAATGCAATGGATAGAGATGGTAGTGGAAGACTGCATTGTTACTCAAACGGAGATACTGCAGGGCCTGTCCATCAAATTAGAGATTCTGACAGCAGGCTTCCTTTTGCAAATTCTGGAAATCCTGTTATGGCTTTGGTTGCCTTTTTAGCCTCTGCAGTTGGACCAAGAGTAGCTGCTTCTTGTGCTCATGCAGCATTAGCAGTATTGTCAATGGATAATTCTGGCAACACTTCACACGTGGAAGCACCAGGACATGATAATAGGACAAATTCCGAAAGCATACGTTGTCGAGATGTTGGGTCTCATGGAGAAACAGCGGTATCAAATAATACTAATGAGGATAAGGCAAAGATACATGGTTCATGGAGTCTAAATGATGGTAGGACAACCCCACTATCTGTTGAGAAAGTTAAAGATGCAGCTAAAGCAGGCCTCTCTGCAGCAGCGATGAAAGCAAAATTATTTGCCGATCATGAAGAGCGAGAAATTCAGAGGTTGTGTGCTAACATAGTTAATCATCAGCTGAAAAGATTAGAGTTGAAGCTGAAACAGTTTGCGGAAATTGAAACATTGTTGATGAAAGAATGCGAACAACTGGAGAGAACAAAGCAAAGGTTTGCTGCTGAGCGGTCTCGTGTAATATCAGCACGTCTTGGAACTGTGGGAGCCGCACCCACAATGACTGCATCGGGTGTTGGTCCTTCAATGGCTAGCAACGGCAACAACAGGCAACAAATGATCTCTGTTTCTCCCTCACAGCCCAGCATCTCAGGGTATGGCGGCAACCAACCAGTTCATCCGCATATGTCCTTTGCCCCACGACCTTCGATGTTTGGGTTGGGGCAAAGATTACCGCTGTCTATGATACAACAATCACAATCAGGTTCTTCAACTGCCATGTTCAATGCCCCCAGTAATGTGCAGTCCACGAGCAATCATCCATTGTTGAGGCCTGTATCAGGAACTAACTCTGGTTTAGGTTAA 2760 0.4663 MGRPLKNEEKGKSVKANRKAAFEARAREAKAPEYYPTRPSTVVPVTATKTHTNTVFCPQTPTIFFPRRSHITHPSSTERERERERERDLPTQKYFFQQQSQPFAPINDPTLKSFPQFSLSLSLSLKPLSPLAMPASPSENRTRWRKRKRDSQIARRHSKHEEEEEEDEENPNAEDDHAEREYDSEEQTHHHQNHPNSQPHVETEVLSDHGVLISQFPAVVKRSVNRPHSSVTAIVALERALESGDNKAQSALTPPVLENVSYGQLQALSSVPSDNFAFDGDSSFVITPPAILEGRGVVKRFGAKVLVVPMHSDWFSPATVHRLERQAVPHFFSGKSPDHTPEKYMECRNCIVALHLEEPGKRITVSDCQGLLTGVDVEDLTRIVRFLDHWGIINYCVQLPSLESPNVMSCLREEPGGEVRVPAEALKSIDSLIKFDNPICKMKAAEIYSSLTAHNADFFDLEDRIREHLSENHCNYCSRPLPVVYYQSQKEVDILLCTDCFHDGRFVIGHSSIDFLRVDSTRDYGELDGDNWTDQETLLLLEAMEIYNENWNEIAEHVGTKSKAQCILHFLRLPMEDGKLENINVPSTSVSSNAMDRDGSGRLHCYSNGDTAGPVHQIRDSDSRLPFANSGNPVMALVAFLASAVGPRVAASCAHAALAVLSMDNSGNTSHVEAPGHDNRTNSESIRCRDVGSHGETAVSNNTNEDKAKIHGSWSLNDGRTTPLSVEKVKDAAKAGLSAAAMKAKLFADHEEREIQRLCANIVNHQLKRLELKLKQFAEIETLLMKECEQLERTKQRFAAERSRVISARLGTVGAAPTMTASGVGPSMASNGNNRQQMISVSPSQPSISGYGGNQPVHPHMSFAPRPSMFGLGQRLPLSMIQQSQSGSSTAMFNAPSNVQSTSNHPLLRPVSGTNSGLG 919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g01272 919 FunFam SWI/SNF complex subunit SMARCC2 isoform C 528 578 - -
Phco7g01272 919 SMART sant 528 576 IPR001005 -
Phco7g01272 919 ProSiteProfiles Zinc finger ZZ-type profile. 469 523 IPR000433 GO:0008270
Phco7g01272 919 MobiDBLite consensus disorder prediction 175 197 - -
Phco7g01272 919 MobiDBLite consensus disorder prediction 66 88 - -
Phco7g01272 919 ProSiteProfiles SWIRM domain profile. 306 404 IPR007526 GO:0005515
Phco7g01272 919 SUPERFAMILY Homeodomain-like 305 398 IPR009057 -
Phco7g01272 919 FunFam SWI/SNF complex subunit SMARCC2 isoform c 312 400 - -
Phco7g01272 919 MobiDBLite consensus disorder prediction 695 717 - -
Phco7g01272 919 CDD SANT 531 573 IPR001005 -
Phco7g01272 919 ProSiteProfiles SANT domain profile. 527 578 IPR017884 -
Phco7g01272 919 Coils Coil 748 768 - -
Phco7g01272 919 MobiDBLite consensus disorder prediction 128 200 - -
Phco7g01272 919 Gene3D - 528 578 - -
Phco7g01272 919 SUPERFAMILY Homeodomain-like 529 583 IPR009057 -
Phco7g01272 919 PANTHER SWI/SNF COMPLEX-RELATED 199 806 - -
Phco7g01272 919 MobiDBLite consensus disorder prediction 691 717 - -
Phco7g01272 919 Pfam SWIRM-associated region 1 735 810 IPR032451 -
Phco7g01272 919 MobiDBLite consensus disorder prediction 882 919 - -
Phco7g01272 919 ProSiteProfiles Myb-like domain profile. 524 574 IPR001005 -
Phco7g01272 919 MobiDBLite consensus disorder prediction 72 88 - -
Phco7g01272 919 Pfam Myb-like DNA-binding domain 531 573 IPR001005 -
Phco7g01272 919 Gene3D - 312 399 IPR036388 -
Phco7g01272 919 Pfam SWIRM domain 309 395 IPR007526 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g01272 Phco-Chr7 11378838 11388468 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g01272 7 11378838 11388468 Phco7g01272 7 11378838 11388468 ECH
Phco2g00810 2 8964303 8969472 Phco7g01272 7 11378838 11388468 PCT