Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00810 ATGCCACCTTCCCCTTCCTTCCCTTCAGACAACAGAACCAAATGGCGGAAGAAGCGCAAGCGACAATCCCACAAACCACACCCCAACCGCCACCACCAAGATGACGACGACAACGATTCCGACGACGACCGCGACGACAACGACTCCGATGACCAATTCCGCAGCCCTAACGCGCCGCCCAACCCCAACCCGAGACTCGAGATCGAGGTCGTCTCGCGCGACGGACTCCAGATTTCGCGCTTTCCGCCGGCGATTAGGCGCACCGTTACCCGTCCTCACGCGGCGGTCGCGGCGATTGTGGCTCTGGAGTCCGGCAGGGGGCACTCGCAGCACGGCGTTCCGGTTCTCGAAAATCTGTCTCACGGCCAGCTTCAGGCGTCCTCGGCTGTGTCCGCTGATTGCCTCGGTGGGGGCTCGAGCTTCGTCGCGGCTCCGCCTCCGGTTATGAAAGGCTCCGGCGTTGTTAAGCGGTTTGGCACTAGGGTTCTAGTGGTCCCTATGCATTCAGATTGGTTTTCTCCAGCCTCAGTGCATCGACTTGAGAGACAAGCAGTGCCACATTTCTTCTCTGGAAAGTCGCCAGATCATACGCCAGAGAAGTACATGGAATGTAGGAATTACATTGTTGCAAGATACATGGAGGACCCAGGGAAGAGGATTACAGTCCCTAGTTGCCAGATTTTGTCTGTTGGTGTTGGTAATGAAGATTTAACTCGAATTGTCAGGTTCCTTGATCAATGGGGAATTATCAATTACTGTGCTCAGGGCCCAAGGTGTGAGTATTTGAACAATGATACCTGTCTGACGGAGGACACAAGTGGCGCACTATGTGTGCCATCAGTGGCCTTAAGATCCATAGATAGTTTGATTGAGTTTGACAAGCCCAAGTGTAAATTCAAAGCTGACGAAATTTATTCATCTCGAACAATGCACAATACTGATATTTCTGATTTGGATGGCACAATAAGAGAGTATCTATCTGAAAACTATTGCCACTATTGTTCCCGTTCTCTTCCTGTTGTATACTACCAATCACAGAAAGAGGTTGATATTTTACTCTGCTCTGATTGCTTTCATGACGGGAGATTTGTTACTGGTCATTCTAGTATAGATTTTATTACAGTGGATTCAACTACAGATTATGGTGATCTAGATGGGGATATTTGGACTGATCAAGAGACTTTATTGCTGCTTGAAGCAGTGGAGGTTTACAGTGAGAATTGGAATGAAATTGCCGAGCATGTTGGTACCAAGTCAAAAGCACAATGCATTCTTCATTTTCTCCGTCTACCTGTAGAAGATGGAAAGTTGGAAAACATCAATGTTTCAAGTTTGTCCTTGTCATCCAATATGAATAATCAAGAGGGTAATGGAAGATTGCATAGTTGCTCAAATGGGAGTTCTGCAGGACCCATACATAACAAAGATTCTGATGGAAGGCTTCCTTTTGCAAATTCTGGAAATCCAGTTATGGCACTGGTTGCCTTTTTAGCCTCTGCTGTTGGACCAAGAGTAGCTGCAACTTGTGCTCATGCAGCATTAGCTGCATTGTCAGAGAATAATTCAGGGAGCACGTCAGGTACAGAAGCTCTGGAAAATGAAAACAGGACAAATTCAGAAAGCATAAACAATAGAGATGGTGGCCGTCATGGAGTGGTTGCAAACTCAAATCAGAAAAATGAGGACAAGTCAAAAGTACCTGGTTCATGTGCTCAAGATGAGGCTGGGTCGATCCTGCTGTCTGCTGAGAAAGTCAAAGATGCTGCCAAAGCAGGTCTCTCTGCTGCAGCAATGAAAGCTAAATTGTTTGCGGATCATGAAGAGCGAGAAATTCAGAGGCTATGTGCTAATATTGTTAATACTAAGTTGAAAAGATTGGAACTGAAGTTGAAGCAGTTTGCAGAAATTGAAACACAGTTGATGAAAGAATGTGAACAAGTTGAGAAGCTGAGGCTGAGGTTTGCTTCTGAACGGTCCCATGTTGTTTCAGCACGTCTTGGAAATGGTGGAACCACTCCTCCGATGAATGTATCAGGCGTTGGTCCTTCCATGATTAACAATAATAGCAACAGTAGGCAGCAAATGATTTCTGCTTCTTCCTCACAGCCTAGCATCTCAGGGTATGGCAACAGCCAACCAGTTCATCCACACATGTCCTTTGTCCCGCGGCCTTCAATGTTTGGATTAGGGCAAAGGTTGCCCCTATCTATGATACAACAATCACAGTCTGTTTCCTCAAATTCGATGTTCAATGGCCCCAGTAATGTGCAGCCTACTCCTAATCATTCGTTGTCGAGGCCTGTGTCAAGAACTAACTCTGGTTTAGGTTAA 2331 0.4655 MPPSPSFPSDNRTKWRKKRKRQSHKPHPNRHHQDDDDNDSDDDRDDNDSDDQFRSPNAPPNPNPRLEIEVVSRDGLQISRFPPAIRRTVTRPHAAVAAIVALESGRGHSQHGVPVLENLSHGQLQASSAVSADCLGGGSSFVAAPPPVMKGSGVVKRFGTRVLVVPMHSDWFSPASVHRLERQAVPHFFSGKSPDHTPEKYMECRNYIVARYMEDPGKRITVPSCQILSVGVGNEDLTRIVRFLDQWGIINYCAQGPRCEYLNNDTCLTEDTSGALCVPSVALRSIDSLIEFDKPKCKFKADEIYSSRTMHNTDISDLDGTIREYLSENYCHYCSRSLPVVYYQSQKEVDILLCSDCFHDGRFVTGHSSIDFITVDSTTDYGDLDGDIWTDQETLLLLEAVEVYSENWNEIAEHVGTKSKAQCILHFLRLPVEDGKLENINVSSLSLSSNMNNQEGNGRLHSCSNGSSAGPIHNKDSDGRLPFANSGNPVMALVAFLASAVGPRVAATCAHAALAALSENNSGSTSGTEALENENRTNSESINNRDGGRHGVVANSNQKNEDKSKVPGSCAQDEAGSILLSAEKVKDAAKAGLSAAAMKAKLFADHEEREIQRLCANIVNTKLKRLELKLKQFAEIETQLMKECEQVEKLRLRFASERSHVVSARLGNGGTTPPMNVSGVGPSMINNNSNSRQQMISASSSQPSISGYGNSQPVHPHMSFVPRPSMFGLGQRLPLSMIQQSQSVSSNSMFNGPSNVQPTPNHSLSRPVSRTNSGLG 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00810 776 MobiDBLite consensus disorder prediction 456 480 - -
Phco2g00810 776 MobiDBLite consensus disorder prediction 13 27 - -
Phco2g00810 776 MobiDBLite consensus disorder prediction 739 776 - -
Phco2g00810 776 Gene3D - 386 435 - -
Phco2g00810 776 PANTHER SWI/SNF COMPLEX-RELATED 47 665 - -
Phco2g00810 776 ProSiteProfiles Zinc finger ZZ-type profile. 326 380 IPR000433 GO:0008270
Phco2g00810 776 MobiDBLite consensus disorder prediction 519 565 - -
Phco2g00810 776 MobiDBLite consensus disorder prediction 1 66 - -
Phco2g00810 776 MobiDBLite consensus disorder prediction 456 472 - -
Phco2g00810 776 MobiDBLite consensus disorder prediction 519 570 - -
Phco2g00810 776 FunFam SWI/SNF complex subunit SMARCC2 isoform C 385 435 - -
Phco2g00810 776 Pfam SWIRM-associated region 1 591 664 IPR032451 -
Phco2g00810 776 Gene3D - 169 256 IPR036388 -
Phco2g00810 776 Pfam Myb-like DNA-binding domain 389 430 IPR001005 -
Phco2g00810 776 SUPERFAMILY Homeodomain-like 386 439 IPR009057 -
Phco2g00810 776 SMART sant 385 433 IPR001005 -
Phco2g00810 776 ProSiteProfiles Myb-like domain profile. 389 431 IPR001005 -
Phco2g00810 776 Coils Coil 623 643 - -
Phco2g00810 776 ProSiteProfiles SANT domain profile. 384 435 IPR017884 -
Phco2g00810 776 CDD SANT 389 430 IPR001005 -
Phco2g00810 776 Pfam SWIRM domain 166 252 IPR007526 GO:0005515
Phco2g00810 776 ProSiteProfiles SWIRM domain profile. 163 261 IPR007526 GO:0005515
Phco2g00810 776 SUPERFAMILY Homeodomain-like 162 257 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00810 Phco-Chr2 8964303 8969472 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g00810 2 8964303 8969472 Phco2g00810 2 8964303 8969472 ECH
Phco2g00810 2 8964303 8969472 Phco7g01272 7 11378838 11388468 PCT