Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g01258 ATGGATGTGAAAAGTAGGGGAATTTCACTCTTTTTACTTCTTTCTTCCATTTTCTCAACCTCTTTCTCAGACTCCGATCAGGTTCTCAACTCCAAGAAGCCAACACCTTCAACCTCTGTCCACTCCCTTGCTTCCTCTGTCGCTTTTCAGATTAAAGGAAATGTTTATCCAATTGGGTATTACACGGTGAACCTTGCCATTGGTAATCCCCCTAAGCTTTATGATCTTGACATTGACACCGGAAGTGATCTCACTTGGCTTCAGTGTGATGCACCATGTAAAGGGTGCACTATACCTCACAATCGACTTTATAAACCCCGCGGCAACCTGGTGAAATGTGTGGATCCCTTGTGTACTGGAGTCCAGTCTGCACCTCCCTGTGCAGTAACAAATGAGCAATGTGACTATGAGGTTGAGTATGCAGACCAAGGATCATCTCTGGGTGTGTTAGTCCGAGATTATGTTCCAGTTAAATTTACTAATGGATCTTTAGCACGCCCTATTCTGGGCTTTGGGTGTGGATATGATCAAACGCATCCTGGTCATAATCCCCCACCTTCCACAGCAGGTGTTCTTGGCCTTGGAAATGGCAGAGCAAGCATTGTATCCCAGCTTCATTCTCTTGGCCTAATTCGCAATGTAGTGGGCCACTGCTTAAGTGGGAGAGGAGGAGGTTTCTTATTCTTTGGAGATCAGTTCATTCCCCAATCTGGAGTTGTTTGGACACCCATATTGCAAAGTTCCTCAGTACAACACTATAAAACAGGTCCAGCAGACATGCTTTTCGATGGAAAGCCTACTTCTGTGAAAGGTCTAGAACTTGTGTTCGATAGTGGGAGCTCCTACACATACTTCAATTCCCGAGCTCATAGAGCTCTTGTTGATCTGATAACTAATGATATAAAGGGGAAGTCGTTGACTAGAGCAACTGCGGATCCATCTCTACCAATTTGTTGGAAGGGTCCAAAGCCTTTCAAATCTTTACATGATGTCACCAGAAATTTTAAGCCACTGGTACTCAGCTTCACAAAATCAAAGAATTCGCTGCTGCAAGTACCACCAGAAGCTTATCTAATTGCCACTAAACATGGCAATGTCTGCTTGGGGATTTTAGATGGCACTGAAATAGGAATGGGAAATATCAACATAATTGGAGATATATCTTTACAGGATAAGATTGTGATTTATGACAACGAGAAACAGCAGATTGGATGGGCATCTGCTAAGTGTGATGGACCTTCCAAGTCATAA 1251 0.4349 MDVKSRGISLFLLLSSIFSTSFSDSDQVLNSKKPTPSTSVHSLASSVAFQIKGNVYPIGYYTVNLAIGNPPKLYDLDIDTGSDLTWLQCDAPCKGCTIPHNRLYKPRGNLVKCVDPLCTGVQSAPPCAVTNEQCDYEVEYADQGSSLGVLVRDYVPVKFTNGSLARPILGFGCGYDQTHPGHNPPPSTAGVLGLGNGRASIVSQLHSLGLIRNVVGHCLSGRGGGFLFFGDQFIPQSGVVWTPILQSSSVQHYKTGPADMLFDGKPTSVKGLELVFDSGSSYTYFNSRAHRALVDLITNDIKGKSLTRATADPSLPICWKGPKPFKSLHDVTRNFKPLVLSFTKSKNSLLQVPPEAYLIATKHGNVCLGILDGTEIGMGNINIIGDISLQDKIVIYDNEKQQIGWASAKCDGPSKS 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g01258 416 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 274 285 IPR001969 GO:0004190|GO:0006508
Phco7g01258 416 Gene3D Acid Proteases 232 412 IPR021109 -
Phco7g01258 416 Gene3D Acid Proteases 36 231 IPR021109 -
Phco7g01258 416 FunFam Aspartyl protease family protein 37 231 - -
Phco7g01258 416 SUPERFAMILY Acid proteases 54 410 IPR021109 -
Phco7g01258 416 ProSiteProfiles Peptidase family A1 domain profile. 61 406 IPR033121 -
Phco7g01258 416 PANTHER ASPARTYL PROTEASES 37 404 IPR001461 GO:0004190|GO:0006508
Phco7g01258 416 Pfam Xylanase inhibitor N-terminal 61 231 IPR032861 -
Phco7g01258 416 PRINTS Pepsin (A1) aspartic protease family signature 67 87 IPR001461 GO:0004190|GO:0006508
Phco7g01258 416 PRINTS Pepsin (A1) aspartic protease family signature 274 285 IPR001461 GO:0004190|GO:0006508
Phco7g01258 416 PRINTS Pepsin (A1) aspartic protease family signature 382 397 IPR001461 GO:0004190|GO:0006508
Phco7g01258 416 Pfam Xylanase inhibitor C-terminal 273 406 IPR032799 -
Phco7g01258 416 FunFam Aspartic proteinase Asp1 isoform A 235 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g01258 Phco-Chr7 11175978 11178362 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g00820 2 9327008 9330001 Phco7g01258 7 11175978 11178362 PCT