Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00820 ATGGATTTTAGAAGCAAGGGAATAACATTGCACTCGCTTTTCGTATCATTTCTTCTATTTTCTACCATTTTCCCACTCTCTTTTTCAGCAGCCAATCAACCCCACAAAGTCAAGAACCTCGCCACCCCACATCGCCTTTCCTCCTCTGCTGTTTTCAAAGTTCAAGGAAATGTGTACCCTCTTGGGCATTACACAGTGTTTTTCAACATTGGCCTTCCGCCCAAGTTTTACGACCTTGACATAGACTCGGGTAGTGACATCACTTGGGTTCAGTGTGATGCACCATGTAAAGGTTGCACCAAGCCTCGTGTGCAACTTTATAAACCCAATCACAACCTGGTGCAATGTGTGGACCAGTTGTGTTCTGAAGTGCACTTATCAACAGACCATAATTGTGCTTCCCCAGATGACCAATGTGACTATGAAGTTGAGTATGCAGATAATGGATCATCTCTGGGTGTGCTAGTCCGGGACCACATTGCTTTTCAATTCACCAATGGCTCTGTGGTGCACCCTAAGATAGCCTTTGGGTGCGGATATGATCAAAAGTATTCTGGTTCTACCTCCCCACCTTCTACGGCAGGAGTCCTTGGCCTTGGCAACGGCAGAGCTAGCATTTTAACTCAGCTTCATTCTTTGGGTCTGATACGCAATGTAGTTGGACACTGCCTAAGTGCAAGAGGAGGAGGATTTTTATTCTTTGGAGATGATCCCGTTCCCTCTTCAGGAATTGTTTGGACATCCATGGTGCATAGTTCTTCGGAAAAACACTACAGCTCAGGACCAGCAGAGCTGTTGTTCAATGGAAAGGCTACTAAAGTTAAGGGTCTTGAACTTATCTTCGATAGTGGGAGCTCTTACACATACTTCAACTCCCTGGCGTATCAAGCTGTTGTAAATTTGGTGACTGGTGATTTAAAGGGGAAACAGTTGACAAGAGCAACCGAGGATCCATCACTTCCAATTTGTTGGAAGGGTCCAAAATCTTTCAAATCGTTAAGTGATATCAAGAAATACTTCAAACCCCTTGCATTCAGCTTCACAAAAACTAAGAATGTGCAGATGCAGCTACCGCCAGAAGCTTATCTTATTATCTCTAAACATGGCAATGTTTGCTTGGGGATTCTAGATGGCACTGAAGTAGGACTAGAAAATCTCAACATAATCGGAGACATCTCTTTACAAGACAAAATGGTCATTTATGACAACGAGAAGCAGCAGATTGGATGGGTTTCTGCAAATTGTGATAGGCTTCCCAATATGGATCGTGATTTGGAAGGTAATCCACACCCATACGCAGCCAATTTGGGTATCTTTGGGAACGGTTTCCCTGCATCTTTTGAAAATATAGACGATCAATGA 1362 0.4361 MDFRSKGITLHSLFVSFLLFSTIFPLSFSAANQPHKVKNLATPHRLSSSAVFKVQGNVYPLGHYTVFFNIGLPPKFYDLDIDSGSDITWVQCDAPCKGCTKPRVQLYKPNHNLVQCVDQLCSEVHLSTDHNCASPDDQCDYEVEYADNGSSLGVLVRDHIAFQFTNGSVVHPKIAFGCGYDQKYSGSTSPPSTAGVLGLGNGRASILTQLHSLGLIRNVVGHCLSARGGGFLFFGDDPVPSSGIVWTSMVHSSSEKHYSSGPAELLFNGKATKVKGLELIFDSGSSYTYFNSLAYQAVVNLVTGDLKGKQLTRATEDPSLPICWKGPKSFKSLSDIKKYFKPLAFSFTKTKNVQMQLPPEAYLIISKHGNVCLGILDGTEVGLENLNIIGDISLQDKMVIYDNEKQQIGWVSANCDRLPNMDRDLEGNPHPYAANLGIFGNGFPASFENIDDQ 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00820 453 Gene3D Acid Proteases 238 422 IPR021109 -
Phco2g00820 453 FunFam Aspartyl protease family protein 41 236 - -
Phco2g00820 453 PANTHER ASPARTYL PROTEASES 50 409 IPR001461 GO:0004190|GO:0006508
Phco2g00820 453 Pfam Xylanase inhibitor N-terminal 64 236 IPR032861 -
Phco2g00820 453 PRINTS Pepsin (A1) aspartic protease family signature 387 402 IPR001461 GO:0004190|GO:0006508
Phco2g00820 453 PRINTS Pepsin (A1) aspartic protease family signature 279 290 IPR001461 GO:0004190|GO:0006508
Phco2g00820 453 PRINTS Pepsin (A1) aspartic protease family signature 70 90 IPR001461 GO:0004190|GO:0006508
Phco2g00820 453 FunFam Aspartic proteinase Asp1 isoform A 240 419 - -
Phco2g00820 453 ProSiteProfiles Peptidase family A1 domain profile. 64 411 IPR033121 -
Phco2g00820 453 SUPERFAMILY Acid proteases 56 420 IPR021109 -
Phco2g00820 453 CDD nucellin_like 62 415 IPR033823 GO:0004190
Phco2g00820 453 Pfam Xylanase inhibitor C-terminal 277 410 IPR032799 -
Phco2g00820 453 Gene3D Acid Proteases 39 236 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00820 Phco-Chr2 9327008 9330001 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g00820 2 9327008 9330001 Phco2g00820 2 9327008 9330001 ECH
Phco2g00820 2 9327008 9330001 Phco7g01258 7 11175978 11178362 PCT