Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g01177 ATGGGTGCATTTTTCAGTGTGGCCAGTACAAAATCTGGCAAGAGGGAATGGAATGGAGTCTCTCCGAATGAGACTTGTAAGAGACAGAGAATGTCTCCTACTGTTGATGAAGAGAGTCCAAGGCTCTTTCCTAATCTCCCTGATGAGTTATCACTTCAGATTATTGCTAGACTTCCTAGAATTTGTTACTTAAATGTAAGGACGGTATCAAAGAAGTGGAAGTCAACTATCATGAGTTTAGAACTGTATAAATTAAGGAAAGAACTTGGGACAACTGAAGAGTGGCTGTATCTATTGATTAAGGATGGAGAAAATAATCTTATATGGCATGCTCTAGATCCTCGTTCTAAGATATGGCAGAGAGTGCCTAATATGCCCAATTTTGCCGATGAAGAAGAGCCTAGAAAAGGTTCTTCTAGGCTTTGGATGTGGAACATGGTGGAGGGTATCAGAATTGCTGAAGTTATTAGAGGTTTTCTTGGACGGAAGGATGCATTTGATGAAATGCCCTATTGCGGTTGTGCAATTGGAGCTGTTGATGGGTGTCTCTATGTTCTTGGTGGATTTTCTAAGGCTTCAACTATGAGATGTGTGTGGCGATTTGATCCGATAGAAAGTACATGGAGCAAGGTGACTCCTATGTCCACGGGCCGGGCGTACAGTAAGACAGGCATCTTAAATAACAAGCTTTATGTTGTTGGAGGGGTTAGCCAAGGTCAAGCTGGATTGGTTCCTCTCCAATCTGCGGAAGTTTTTGATCCCTCTACAGATACATGGTCGCATGTACCCAGTATGCCATTCTCTAGAGCTCAAGTCCTTCCCAGTGCTTTTTTGGCTGACATGTTAAAGCCTATTGCCACAGGGTTGACCTCATACATGGGAAGGTTGTGTGTTCCACAGAGTCTGTATTCATGGCCCTTTTTTGTTGATGTTGGGGGAGAAATCTATGATCCTGACACTGACTCATGGATAGAAATGCCCGCTGGAATGGGTGAAGGCTGGCCTGCACGGCAGGCAGGAACCAAATTGAGTGTAGTAGTGGACGGTGAATTATATGCTTTTGACCCTTCTAATTCTATGGATAGTGGAAGGATTAAGGTATATGACCAAGGTGAAGATGCTTGGAAAGTAGTTATTGGAAAAGTGCCCATATATGATTCTGCTGATTCAGAGTCTCCATATCTACTTGCTGGTTTCCATGGAAAGCTCCATGTTATTACAAAAGATGCCAACCATGATATTGCTGTTCTGCAGGCAGGCCTGCGGAATAATTTGGGATCCTCACCATCAACTGTGTCACAAAGTACATTGCATGAATCTCCCGAACTGGCTTCTGAATCAGATGCAGCCGTTGTTTGGAGGGTAGTTGCCTGCAGGGATTTTGGGCGGGCTGAACTAGTCAGTTGCCAAGTTATTGACATATAG 1425 0.4372 MGAFFSVASTKSGKREWNGVSPNETCKRQRMSPTVDEESPRLFPNLPDELSLQIIARLPRICYLNVRTVSKKWKSTIMSLELYKLRKELGTTEEWLYLLIKDGENNLIWHALDPRSKIWQRVPNMPNFADEEEPRKGSSRLWMWNMVEGIRIAEVIRGFLGRKDAFDEMPYCGCAIGAVDGCLYVLGGFSKASTMRCVWRFDPIESTWSKVTPMSTGRAYSKTGILNNKLYVVGGVSQGQAGLVPLQSAEVFDPSTDTWSHVPSMPFSRAQVLPSAFLADMLKPIATGLTSYMGRLCVPQSLYSWPFFVDVGGEIYDPDTDSWIEMPAGMGEGWPARQAGTKLSVVVDGELYAFDPSNSMDSGRIKVYDQGEDAWKVVIGKVPIYDSADSESPYLLAGFHGKLHVITKDANHDIAVLQAGLRNNLGSSPSTVSQSTLHESPELASESDAAVVWRVVACRDFGRAELVSCQVIDI 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g01177 474 Pfam F-box domain 43 83 IPR001810 GO:0005515
Phco7g01177 474 SMART kelc_smart 229 279 IPR006652 GO:0005515
Phco7g01177 474 SMART kelc_smart 182 228 IPR006652 GO:0005515
Phco7g01177 474 SUPERFAMILY F-box domain 40 84 IPR036047 GO:0005515
Phco7g01177 474 Gene3D - 102 385 IPR015915 GO:0005515
Phco7g01177 474 SUPERFAMILY Kelch motif 99 406 IPR015915 GO:0005515
Phco7g01177 474 SMART fbox_2 46 86 IPR001810 GO:0005515
Phco7g01177 474 MobiDBLite consensus disorder prediction 1 39 - -
Phco7g01177 474 ProSiteProfiles F-box domain profile. 40 86 IPR001810 GO:0005515
Phco7g01177 474 PANTHER OS02G0202900 PROTEIN 27 473 IPR045887 -
Phco7g01177 474 MobiDBLite consensus disorder prediction 11 29 - -
Phco7g01177 474 Pfam Kelch motif 218 266 IPR006652 GO:0005515
Phco7g01177 474 Pfam Kelch motif 170 215 IPR006652 GO:0005515
Phco7g01177 474 CDD F-box_AtAFR-like 42 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g01177 Phco-Chr7 10201418 10202842 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g01177 7 10201418 10202842 Phco7g01177 7 10201418 10202842 ECH
Phco3g01332 3 12892211 12897011 Phco7g01177 7 10201418 10202842 PCT