Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g01332 ATGATAACAATATCAAAGCCAAATCCTCATCCTCAAACTTCACATCTAGATTCAACAGATAATGATTTATTAGTCACACTGACTCTAACACCACACTTGCCAGACAGAGGAAAGAAGCAACTGACAGATCCTTCCAATTTTGTGAATGAAGAAAAAGGTTCTGGGTTCTTAAATTTCCTTTCAAGCTTCTGTTTTTTGCTTGATATTGAGCTTATGGGTTCTTTGTTTAGCATGGCTAGTACCAAGACCAATCAAAGTGAATCTAAGGAAATATGTCCTAATGAGAGGTTTAAGAGGCAAAGAATGTCACCTGCCACAGTTGAAGAATCTCCAAGACTTATTCCTAATCTCCCTGATGAGTTATCCCTTCAGATTATGGCTAGAATTCCTAGAATTTGTTACTATCGTATAAGGCTGGTGTCTAGGAGGTGGAAAGCGACTATCATGGGTTCTGAATTATATAAAGTAAGGAAAGAGATTGGAACATCTGAAGAGTGGCTATATCTGTTGGTTAGGGATGGGCAAAATAAACTCTTGTGGCATGCTCTAGACCCCCGCTCTGGAATATGGCAGAGACTTCCTGTTATGCCCAGTGTTGTGGATGAAGAAAATTCCCAAAAGGGTTCTTCTAGGTTTTGGATGTGGAACATGGTAGAAGGTATCAGAATTGCTGAAATTATTAGAGGTCTTCTCAGACAGAAGGATGCACTAGATGACATGCCTTTTTGTGGTTGTTCCTTCGGAGCTCTTGATGGATGCCTTTATGTTCTAGGTGGATTCTCTAAAGCTTCAACTGTGAAATGTGTTTGGCGATTTGATCCGATAAAGAATGTGTGGAAGAAGGTTAATTCTATGTCCACAGGTAGGGCATATTGCAAGACAAGCATCTTAAACAACAAGCTTTATGTTGTTGGAGGGGTTAGTCAAGGTCAAGCAGGATTGATTCCTCTTCGGTCTGCTGAAGTTTTTGATCCATTTACGGATACATGGTCCGATGTACCTAGTATGCCATTCTCGCGAGCTGGAGTGCTGCCCACAGTTTTTCTGGCTGACATGTTAAGGCCTATTGCCACTGGGCTAACCTCATACAAGGGAAGGTTATATGTTCCTCAAAGTTTGTATTCATGGCCCTTTTTTGTTGATGTTGGGGGAGAAATATATGATCCAGAAACAAATTCATGGATAGAAATGCCAAATGGAATGGGTGAAGGATGGCCAATTAAGCAGGCAGGAACAAAATTGAGTGTTGTACTGAATGATGAACTATATGCTTTTGATCCTTCAAATTCTATGGATAATGGAAAGATCAAGGTATATGATGAAGGAGAGGATGCATGGAAAGTTGTTATTGGAAAAGTCCCTGTGTATGACTTTAACAATTCAGAATCTCCATATCTATTAGCAGCTTTCCATGGAAAGCTTCATTTCATTGCAAGAGATTCCAAGCAAGATATTGCTATTCTGCAGGCTGTTCCATGCAGTAATTTTGATTCTTCACCATCAGCCTCAACATCTCTATCACCCAAATCCATGCAGGATGAATTTTTGATAGATTCGGCTGCCGAAACCGAAACAGATGCAGTTGTTTGGATAGAAGTGGCCAGTAGGAGTTTTGGGCTGTCTGAACTCATCAATTGCCAAGTTATTGATATCTAA 1656 0.4016 MITISKPNPHPQTSHLDSTDNDLLVTLTLTPHLPDRGKKQLTDPSNFVNEEKGSGFLNFLSSFCFLLDIELMGSLFSMASTKTNQSESKEICPNERFKRQRMSPATVEESPRLIPNLPDELSLQIMARIPRICYYRIRLVSRRWKATIMGSELYKVRKEIGTSEEWLYLLVRDGQNKLLWHALDPRSGIWQRLPVMPSVVDEENSQKGSSRFWMWNMVEGIRIAEIIRGLLRQKDALDDMPFCGCSFGALDGCLYVLGGFSKASTVKCVWRFDPIKNVWKKVNSMSTGRAYCKTSILNNKLYVVGGVSQGQAGLIPLRSAEVFDPFTDTWSDVPSMPFSRAGVLPTVFLADMLRPIATGLTSYKGRLYVPQSLYSWPFFVDVGGEIYDPETNSWIEMPNGMGEGWPIKQAGTKLSVVLNDELYAFDPSNSMDNGKIKVYDEGEDAWKVVIGKVPVYDFNNSESPYLLAAFHGKLHFIARDSKQDIAILQAVPCSNFDSSPSASTSLSPKSMQDEFLIDSAAETETDAVVWIEVASRSFGLSELINCQVIDI 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g01332 551 CDD F-box_AtAFR-like 113 157 - -
Phco3g01332 551 Pfam F-box-like 114 155 IPR001810 GO:0005515
Phco3g01332 551 PANTHER OS02G0202900 PROTEIN 84 550 IPR045887 -
Phco3g01332 551 ProSiteProfiles F-box domain profile. 111 157 IPR001810 GO:0005515
Phco3g01332 551 SMART kelc_smart 300 350 IPR006652 GO:0005515
Phco3g01332 551 SMART kelc_smart 253 299 IPR006652 GO:0005515
Phco3g01332 551 Pfam Kelch motif 289 337 IPR006652 GO:0005515
Phco3g01332 551 Pfam Kelch motif 241 286 IPR006652 GO:0005515
Phco3g01332 551 SUPERFAMILY Kelch motif 172 477 IPR015915 GO:0005515
Phco3g01332 551 SMART fbox_2 117 157 IPR001810 GO:0005515
Phco3g01332 551 Gene3D - 151 455 IPR015915 GO:0005515
Phco3g01332 551 SUPERFAMILY F-box domain 110 162 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g01332 Phco-Chr3 12892211 12897011 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g01332 3 12892211 12897011 Phco3g01332 3 12892211 12897011 ECH
Phco3g01332 3 12892211 12897011 Phco7g01177 7 10201418 10202842 PCT