Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g01147 ATGGCAGCTATGATGGGTTTTTACAGCAGCACAGAGTTTCAACTTCCCTCAGATCCGTTCCGGGGTGAACTAATGGAAGTTCTTGAAACTTTTATGAAAAGTCCTTCCTCAACCCCCTCTTTCTCTTCCTCACCTTCAAACTCCTCTTTCCCTTCTACTTCTTACTCTCCTTCTCCCGTCTACTTCCCCTCCTCACCCTCCTTGCCTAATATTTATGCAAACAACTGCTCCGCGTCGATGAACCATGTATTTTCCGACGGCATATCCCTATCCAACAACACTCAAAATATCATAGGCTTCGCGCAAGGCCAACCAGCATCTCTTCTCGGCCTCAACCACCTAACCCCCTCTCAGATCTCTCAGATCCAGGCTCAAATCCAGATTCAGAGCCAGCATCAGCAGAATCTCAACACCCTCAACTTCCTCGGGCCCAAGCCCATCCCTATGAAGCACGCGGGCATGCCTCTGAAGCCCACGAAGCTGTACCGAGGGGTGCGTCAGAGGCACTGGGGGAAGTGGGTGGCTGAGATCAGACTCCCCAAGAATCGGACCAGGCTCTGGCTGGGAACCTTCGACACCGCCGAGGAAGCCGCTCTGGCGTACGACAAGGCCGCGTACAAACTCCGAGGTGATTTCGCCAGGCTTAACTTCCCCAACCTCCGTCACCAGGGTTCCTCGGTGGGCGGAGGCTTCGGGGAGTACAAGCCGCTCCATTCCTCTGTTGACGCTAAGCTTCAGGCCATTTGCGAAGGCCTGGCTGAGATGCAGAAACAGGGAAAGACCGATAAGCCTCAGGGTTCGTCCAAGAGGTCGCGAGCCAAAGTCGCTCCTCCGCCAGAGAAGGCTGATTCCGATAAGGGTTCGGACGACAACACCACCAACAACTCTTGCAAAGTGGAAGCATCCTCGTCTCCCGTTACGACGGAAAGCGAGGGGTCTGAAGGTTCTTCGCCTCTCTCGGATCTGACATTTGTTGACGTGAGCGAGCCTCAGTGGGAAGGTGATTCGGATAATTTTAACCTCCACAAGTACCCCTCTTATGAGATCGACTGGGATTCTCTGTGA 1065 0.5371 MAAMMGFYSSTEFQLPSDPFRGELMEVLETFMKSPSSTPSFSSSPSNSSFPSTSYSPSPVYFPSSPSLPNIYANNCSASMNHVFSDGISLSNNTQNIIGFAQGQPASLLGLNHLTPSQISQIQAQIQIQSQHQQNLNTLNFLGPKPIPMKHAGMPLKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLRHQGSSVGGGFGEYKPLHSSVDAKLQAICEGLAEMQKQGKTDKPQGSSKRSRAKVAPPPEKADSDKGSDDNTTNNSCKVEASSSPVTTESEGSEGSSPLSDLTFVDVSEPQWEGDSDNFNLHKYPSYEIDWDSL 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g01147 354 CDD AP2 160 220 IPR001471 GO:0003700|GO:0006355
Phco7g01147 354 SMART rav1_2 161 224 IPR001471 GO:0003700|GO:0006355
Phco7g01147 354 ProSiteProfiles AP2/ERF domain profile. 161 218 IPR001471 GO:0003700|GO:0006355
Phco7g01147 354 Gene3D AP2/ERF domain 161 219 IPR036955 GO:0003700|GO:0006355
Phco7g01147 354 SUPERFAMILY DNA-binding domain 161 219 IPR016177 GO:0003677
Phco7g01147 354 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 8 354 - -
Phco7g01147 354 MobiDBLite consensus disorder prediction 256 337 - -
Phco7g01147 354 MobiDBLite consensus disorder prediction 263 288 - -
Phco7g01147 354 Pfam AP2 domain 162 210 IPR001471 GO:0003700|GO:0006355
Phco7g01147 354 PRINTS Ethylene responsive element binding protein signature 184 200 IPR001471 GO:0003700|GO:0006355
Phco7g01147 354 PRINTS Ethylene responsive element binding protein signature 162 173 IPR001471 GO:0003700|GO:0006355
Phco7g01147 354 FunFam Ethylene-responsive transcription factor 2 160 219 - -
Phco7g01147 354 MobiDBLite consensus disorder prediction 289 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g01147 Phco-Chr7 9870017 9871081 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Phco7g01147 AP2 8.1e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g01147 7 9870017 9871081 Phco7g01147 7 9870017 9871081 ECH
Phco3g01312 3 12543265 12544245 Phco7g01147 7 9870017 9871081 PCT