Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g01312 ATGATGGATTTCTACAACGGAGAACCACAAGTTCAGTCGGATCCATTCACAGGCGAGCTGATGGAAGTTCTAGAACCTTTTATGAAAAGTCCTTCCTCAACTCCCTCGTTATCTTCAGATTCAGCTTTACCTTCAACTTCGACTTCCTATTCCTACTCTCCTTACCCTCTTTCTCTCCCTTCACACCCCAATTTCTACACAGACCCTACCTCCTCCTACCTATACCAAACCCAAACCCTTGTAGGCTTTCAACAGCAACCCAGTTCTGTTGTCGGGCTCAACCACCTAAGCCCGTTTCAGGTTTCTCAGATCCAGGCTCAGATGCAGGCTCAGAGCCAGACCTCCCTCTCCCTGAACTTCCTCGGCCCGAAGCCCGTGGCAATGAAGCAAGTGGGTGGGTCTCCGAAGCCCGCGAAGCTGTACCGCGGGGTGAGGCAGAGGCATTGGGGAAAGTGGGTGGCAGAGATCAGGCTCCCCAAGAACCGCACAAGGCTCTGGCTCGGAACCTTCGACACTGCCGAGGAAGCCGCTTTGGCGTATGACAAAGCCGCGTACAGACTCCGAGGCGACTTCGCTAGGCTCAACTTCCCGAACCTCAAAGGGTCGTTGCTCAGCGAGTACAAGCCTCTTCAGTCAGCGGTGGACGCTAAGCTCGACGCCATTTGTCAGAGCCTGGCCGAAATGCCGAAGCAGGGGAAGACGGAGAAGGGTGCCAGGTCATCATCCAAGAAGTCAAAAGCAGCTCCAAAGGAGGCTCGGAATCCGAACCAGGATCCCAACCCCAACCTTTCTTGTAAGGCGGAGCCTGAGCTTGAGCCTGAAGCCGAACCTGCTCTGTCCCCTGAAAGTGAGGGTTCTGTGGATTCTTCTCTGCTCTCTGATCTCACCTTTGATGCCAGCGAGCCGCAATGGGAAGATGCTTCTGCACATTTTAACTTGCAGAAATTTCCTTCTTACGAGATCGATTGGGATTCTCTCTGA 981 0.5352 MMDFYNGEPQVQSDPFTGELMEVLEPFMKSPSSTPSLSSDSALPSTSTSYSYSPYPLSLPSHPNFYTDPTSSYLYQTQTLVGFQQQPSSVVGLNHLSPFQVSQIQAQMQAQSQTSLSLNFLGPKPVAMKQVGGSPKPAKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYRLRGDFARLNFPNLKGSLLSEYKPLQSAVDAKLDAICQSLAEMPKQGKTEKGARSSSKKSKAAPKEARNPNQDPNPNLSCKAEPELEPEAEPALSPESEGSVDSSLLSDLTFDASEPQWEDASAHFNLQKFPSYEIDWDSL 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g01312 326 MobiDBLite consensus disorder prediction 229 299 - -
Phco3g01312 326 FunFam Ethylene-responsive transcription factor 2 139 198 - -
Phco3g01312 326 ProSiteProfiles AP2/ERF domain profile. 140 197 IPR001471 GO:0003700|GO:0006355
Phco3g01312 326 MobiDBLite consensus disorder prediction 232 251 - -
Phco3g01312 326 CDD AP2 139 199 IPR001471 GO:0003700|GO:0006355
Phco3g01312 326 PRINTS Ethylene responsive element binding protein signature 141 152 IPR001471 GO:0003700|GO:0006355
Phco3g01312 326 PRINTS Ethylene responsive element binding protein signature 163 179 IPR001471 GO:0003700|GO:0006355
Phco3g01312 326 SMART rav1_2 140 203 IPR001471 GO:0003700|GO:0006355
Phco3g01312 326 SUPERFAMILY DNA-binding domain 140 197 IPR016177 GO:0003677
Phco3g01312 326 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 3 326 - -
Phco3g01312 326 Pfam AP2 domain 141 189 IPR001471 GO:0003700|GO:0006355
Phco3g01312 326 MobiDBLite consensus disorder prediction 283 297 - -
Phco3g01312 326 Gene3D AP2/ERF domain 140 198 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g01312 Phco-Chr3 12543265 12544245 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Phco3g01312 AP2 1.2e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g01312 3 12543265 12544245 Phco7g01147 7 9870017 9871081 PCT