Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g01142 ATGGAAGGGAAAACCAAGGACAAGGTGGACTTTGATTTGGGTTGCGGTTTGGTGGGGAAAATTTTCCACCTCAAAACCATTAACAGGCCAAGAAAATCCTCTGTTCATTCACTACCCATGAAGGCTTGCAACACTGCACAACAGAGAGAGCAGGCCAAAACCGAGTTCAAACCCCCTCTAAACCATGAACCAAAGGTTCCACGGGATAGCGCCATTGGAGTCAATCCTACACTGAAGGGGGAGCAGAATCCTGCGAGAAAGAGTAGCTCTAGTCACCGTGGACCTTCTGCATACCGAAACACTCCAAATGAGAGACCCTCAGACGCTGCAAGAACCTCAATTCGACAAACCCATGACCCAAATGACGAGAGTAAGCAACAGAAAGAGAACTCTGGTAATTCTCTGGAACTTGCTAGGATAAGTACAAGTGCTAGTCATCATCAGAACAACGAGACCAAATCCCCAGCTAAAGAATTTGTGTTACCAATAACTGGGAATTTGCTTGTGAATAGCAGCCCCCGAACTAGTGTTACCAAGAGCAAGGAGTCGAACTCCATGTCCGGTTCCTCTGCTTACAGTAGTAACGGCAACAAAGGCGTGATGGGGAATATCATGAGGAAGAACAGCAATGAGCTTGCGCAATTTCGGAGTCCAAGGAACAGCAGAGCGGACCCGGAGGTGATGAAGTCCATGGGGAATGAAGCCTACAAGCTAGGAAGATTTGAAGAGGCTTTGGTTTTGTATGACAGAGCCATTGCTCTTGACTCCAATAAGGCAACCTATCATTGCAATAAGAGCGCAGCTTTGATGGGATTGGGAAGGTTTCTGCAGGCAATTGTTGAGTGCGAGGAAGCTATCAGATTGGAGCCTTCTTATGGCAGAGCCCACGACCGTTTGGCAACAATTTATTTCAGACTGGGAGAAGCAGAAAAGGCACTGAATTGCAATGAAACAAGCCCATGTGTTGATTCCGTTCTCACTTTACAAGCTCAGGCTCTTCAAAATCACCTTACCAAATGCACTGACGCTCGGAAAGCCAAAGACTGGAAAGCTATACTAAAGGAAACACAGGCTGCAGTATCTTTAGGTGCTGATTCAGCTCCACAGGTCTATTGTTTACAAACTGAAGCCTTGCTGAAGCTCCTAAGACATCAAGAGGCATACGCTACCTACGAGAAAATGCCAAAATTTGACCTTGATAGTTGTAAGAAAATATTCGGCCCAGCTCGTAGTGCTTACCTCATGATGATAGCTGCGCAAATTTACTTGGCAGCCGGCAGGTTTGAGGATGCTGTAAGGACTTCTCAGCAAGCAGCTAAACTAGATCCAAGTAGCTTTGAGGTGAATGCAGTGGTGAGGACAGCCAGAGCAGTGACATCAGCCAGAATGAGTGGTAACTTACTCTTCAAGGCATCAAAATTGACGGAAGCATGCGCTGTGTACAATGAAGGACTAGAGCATGATCCATACAACTCAGTTCTGCTATGCAATAGGGCAGCATGTCGTTCTAAGCTAGGTCAATTTGAGAAAGCAATTGAGGATTGCAACGTAGCACTTGTAGTTCAGCCTAGTTATAGCAAGGCAAGGTTGAGAAGGGCAGATTGTAATGCCAAGTTGGAGCGATGGGAAGCTGCGATTCAAGACTATGAAATGCTATTAAGAGAAAAGCCAGGGGATGAGGAGGTGGCCAGAGCTCTGTTTGAGACTCAGCTTCAACTCAAGATGCTGCGTGGAGAAGATATTAAGGACTTGAAATTTGGTTCAAATTTGTTTTTCATCTCAACCAATGATCGGTTTAGACACTACGTAACATCACCTGGGATGTCTGTGGTGCTCTTTTGCAACAAGGCAACCCACAAAAAAGTATTGTTGGTGTTGGAGCAAACCTGCAAGAGATTTCCATCAGTTAATTTTCTTAAGGTGGAGATTGAAGACCACCCCTACTTGGCAAAATCAGAAGGTGTGAACTGCATCCCAGCCTTTAAAATATACAAGAATGGATCAAGGGTTAAAGAAATTCCAGGCAACAACCACGAGTTGTTAGAAAAATTAGTTAAATTATATAGCAGTTGA 2073 0.4501 MEGKTKDKVDFDLGCGLVGKIFHLKTINRPRKSSVHSLPMKACNTAQQREQAKTEFKPPLNHEPKVPRDSAIGVNPTLKGEQNPARKSSSSHRGPSAYRNTPNERPSDAARTSIRQTHDPNDESKQQKENSGNSLELARISTSASHHQNNETKSPAKEFVLPITGNLLVNSSPRTSVTKSKESNSMSGSSAYSSNGNKGVMGNIMRKNSNELAQFRSPRNSRADPEVMKSMGNEAYKLGRFEEALVLYDRAIALDSNKATYHCNKSAALMGLGRFLQAIVECEEAIRLEPSYGRAHDRLATIYFRLGEAEKALNCNETSPCVDSVLTLQAQALQNHLTKCTDARKAKDWKAILKETQAAVSLGADSAPQVYCLQTEALLKLLRHQEAYATYEKMPKFDLDSCKKIFGPARSAYLMMIAAQIYLAAGRFEDAVRTSQQAAKLDPSSFEVNAVVRTARAVTSARMSGNLLFKASKLTEACAVYNEGLEHDPYNSVLLCNRAACRSKLGQFEKAIEDCNVALVVQPSYSKARLRRADCNAKLERWEAAIQDYEMLLREKPGDEEVARALFETQLQLKMLRGEDIKDLKFGSNLFFISTNDRFRHYVTSPGMSVVLFCNKATHKKVLLVLEQTCKRFPSVNFLKVEIEDHPYLAKSEGVNCIPAFKIYKNGSRVKEIPGNNHELLEKLVKLYSS 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g01142 690 Pfam Thioredoxin 620 683 IPR013766 -
Phco7g01142 690 MobiDBLite consensus disorder prediction 111 126 - -
Phco7g01142 690 Coils Coil 532 552 - -
Phco7g01142 690 Pfam Tetratricopeptide repeat 418 492 - -
Phco7g01142 690 Pfam Tetratricopeptide repeat 504 559 - -
Phco7g01142 690 MobiDBLite consensus disorder prediction 38 54 - -
Phco7g01142 690 SUPERFAMILY TPR-like 463 574 IPR011990 GO:0005515
Phco7g01142 690 MobiDBLite consensus disorder prediction 30 135 - -
Phco7g01142 690 SUPERFAMILY Thioredoxin-like 577 686 IPR036249 -
Phco7g01142 690 Gene3D Glutaredoxin 587 689 - -
Phco7g01142 690 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 14 686 IPR044534 -
Phco7g01142 690 ProSiteProfiles TPR repeat profile. 412 445 IPR019734 GO:0005515
Phco7g01142 690 SUPERFAMILY TPR-like 224 447 IPR011990 GO:0005515
Phco7g01142 690 Pfam TPR repeat 232 273 - -
Phco7g01142 690 CDD TRX_family 599 684 - -
Phco7g01142 690 Gene3D Tetratricopeptide repeat domain 223 577 IPR011990 GO:0005515
Phco7g01142 690 ProSiteProfiles TPR repeat profile. 225 258 IPR019734 GO:0005515
Phco7g01142 690 MobiDBLite consensus disorder prediction 81 110 - -
Phco7g01142 690 MobiDBLite consensus disorder prediction 169 199 - -
Phco7g01142 690 SMART tpr_5 259 292 IPR019734 GO:0005515
Phco7g01142 690 SMART tpr_5 412 445 IPR019734 GO:0005515
Phco7g01142 690 SMART tpr_5 225 258 IPR019734 GO:0005515
Phco7g01142 690 SMART tpr_5 458 491 IPR019734 GO:0005515
Phco7g01142 690 SMART tpr_5 526 559 IPR019734 GO:0005515
Phco7g01142 690 SMART tpr_5 492 525 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g01142 Phco-Chr7 9776180 9779425 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g01142 7 9776180 9779425 Phco7g01142 7 9776180 9779425 ECH
Phco3g01306 3 12467097 12470159 Phco7g01142 7 9776180 9779425 PCT