Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g01306 ATGGCAGCGAAGGCAAAGAACAAAAAGGTGGGGAGTGAATTGGGTTGTGGCCTCATGGGGAGAATTCTCCACCTCAAAAGCCACAAGCTCAGAAAATCATCCGTTCACTCCCTACCCTTGAAGAATCCACAGAGTGATGATGATGGCAAAAGTGAAGAACCAAAGAAGACCCCAAATGAAGAATCAAAGGTTACAAAAAAAGGCTGCACTGAGCCACACAGACTGAGTGGTGCAGAACAGAACCCGGCCAGAAAGAGTGCCTCTGTTCACCAACAACAACCTTGTACATATCGAAACAGTCAAAATCAAAGGCCTTCAGATGTTGTTGCAAGAAGCTCAACATCATCACCATCCCCTAGAGCTTCAATTTCAACTCACACTAAGGTTCAACAAAACAAGGACAAGAATCATAAGGGCAAGCCATATAGAGACCACGCTGAAAATTCTCTTGCACTTGCTAGGATAAGTACTAGCAATGAGAACAATAAGTCTAAATTGAAGCTCACTGGGAATTTGCTTGTGAATAATACCCCAAGGAGAAAGAGTGTGGAGTACATGCCTAAAAATGCAGAGTTGAACTCTGTGCCCATTTCCTACTCCAATACAAGCAAAGGTTCAATGGGGAATATCATGAGGAGGAACAGCACTGGCAATGAGGTTGGACAGTTTTTGAGTCCAAGGCAGAAAAAAGTGGACCCTGAGGTGTTGAAATCCATGGGAAATGAAGCATACAAGCAGGGAAGATTTGAAGAGGCTTTGGCTTTGTATGACCGAGCAATTGCACTTGATTCAAATATGGCAACGTACCATTGCAACAAGAGTGCGGCTTTAATTGGTTTAGGAAGGCTTCAACAAGCAATTTTTGAGTGTGAGGAATCTATCAAACTGGACCCTTCGTATGTCAGAGCTCACAACCGCTTGGCCACAATATATTTCAGGTTGGGAGAAGCAGAAAAAGCACTGGATTGCAACCAATCAACCGGATGTGCTGATTCAATACTTGCTTTCCAAGCTCAGGCTCTTCAAAATCATCTTAACAAATGCATAGAAGCACGGAGAGTAAATGCTTGGAGTGATGTACTAAAGGAAACACAGTCTGCAATATACTTAGGTGCTGATTCAGCTCCACAGGTCTATGCTTTACAAACTGAAGCCTTTCTGAAGCTTCTAAGATATCAAGAGGCTTATGCCATCTATGAAAATATGCCAAAATTTCCACTTGATTGGTGTACCAAGGTATTTGGTCCGGCGCGCAGCGCTTACCTATTGATGATAGGAGCACTGGTTTACTTGGCCACTGGCAGGTTTGAGGAAGCTGTGACAGCAGCTCAGCTAGCAGCTAAAGTTGATCCAGGCAATAGAGAGGTGAATGCAGTGGTAAGGAGGGCCAGAGCAGCAACATCAGCTAGAATGAGTGGGAACTTGCTCTTCAAGGCCTCAAAATTCACCGAATCATGTGCGGTGTACAACGAAGGACTTGAACATGATCCTCACAACTCAGTTCTGTTATGCAACAGAGCTGCTTGTCGTTCTAAGCTTGGCCAATATGAGAAAGCAATTGAAGATTGTAACTCGGCACTTATGTTTCAGCCAGGTTATAGCAAAGCAAGATTAAGGAGGGCAGATTGCAATGCCAAGTTAGAACGGTGGGAAGCTGCTATTCAAGACTATGAAATGCTATTGAGAGAAAGGCCAGGGAACGAGGAAGTGGCAAGGGCTTTGTTTGAAGCTCAGCTCCAACTAAAGATGCTGCGAGGTGAAGATATTAAGGACTTGAAATTTGGTTCAAACTTGGTTTTCATCTCAAGTAATGATCGGTTCAGACATCATGTAACCTCACCTGGGATGGCTGTGGTGCTCTTTAGCAACAAGTCAACCCACAAGAAAGTGTTACTTATGTTGGAGCAAACCAGCAAAAGATTCCCATCAGTTCATTTCCTCAAGGTGGAAATCGAAGACCACCCTTACTTGGCAAAGTCAGAAGGTGTAAGCTCCATCCCAGCCTTCAAAATATACAAAAACGGATCAAGAGTTAAAGAAATTTCAGGCAACAACCACGAGTTGTTAGAAAGATCAGTTGAATTATACAGTAGCTGA 2097 0.4359 MAAKAKNKKVGSELGCGLMGRILHLKSHKLRKSSVHSLPLKNPQSDDDGKSEEPKKTPNEESKVTKKGCTEPHRLSGAEQNPARKSASVHQQQPCTYRNSQNQRPSDVVARSSTSSPSPRASISTHTKVQQNKDKNHKGKPYRDHAENSLALARISTSNENNKSKLKLTGNLLVNNTPRRKSVEYMPKNAELNSVPISYSNTSKGSMGNIMRRNSTGNEVGQFLSPRQKKVDPEVLKSMGNEAYKQGRFEEALALYDRAIALDSNMATYHCNKSAALIGLGRLQQAIFECEESIKLDPSYVRAHNRLATIYFRLGEAEKALDCNQSTGCADSILAFQAQALQNHLNKCIEARRVNAWSDVLKETQSAIYLGADSAPQVYALQTEAFLKLLRYQEAYAIYENMPKFPLDWCTKVFGPARSAYLLMIGALVYLATGRFEEAVTAAQLAAKVDPGNREVNAVVRRARAATSARMSGNLLFKASKFTESCAVYNEGLEHDPHNSVLLCNRAACRSKLGQYEKAIEDCNSALMFQPGYSKARLRRADCNAKLERWEAAIQDYEMLLRERPGNEEVARALFEAQLQLKMLRGEDIKDLKFGSNLVFISSNDRFRHHVTSPGMAVVLFSNKSTHKKVLLMLEQTSKRFPSVHFLKVEIEDHPYLAKSEGVSSIPAFKIYKNGSRVKEISGNNHELLERSVELYSS 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g01306 698 SUPERFAMILY TPR-like 233 455 IPR011990 GO:0005515
Phco3g01306 698 MobiDBLite consensus disorder prediction 81 129 - -
Phco3g01306 698 Pfam Tetratricopeptide repeat 536 566 IPR019734 GO:0005515
Phco3g01306 698 Coils Coil 540 560 - -
Phco3g01306 698 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 3 694 IPR044534 -
Phco3g01306 698 MobiDBLite consensus disorder prediction 43 73 - -
Phco3g01306 698 MobiDBLite consensus disorder prediction 30 145 - -
Phco3g01306 698 CDD TRX_family 607 685 - -
Phco3g01306 698 SUPERFAMILY TPR-like 470 582 IPR011990 GO:0005515
Phco3g01306 698 SUPERFAMILY Thioredoxin-like 518 689 IPR036249 -
Phco3g01306 698 ProSiteProfiles TPR repeat profile. 233 266 IPR019734 GO:0005515
Phco3g01306 698 Pfam Thioredoxin 628 688 IPR013766 -
Phco3g01306 698 Pfam TPR repeat 240 275 - -
Phco3g01306 698 Gene3D Tetratricopeptide repeat domain 231 585 IPR011990 GO:0005515
Phco3g01306 698 MobiDBLite consensus disorder prediction 130 145 - -
Phco3g01306 698 Pfam Tetratricopeptide repeat 427 499 - -
Phco3g01306 698 SMART tpr_5 500 533 IPR019734 GO:0005515
Phco3g01306 698 SMART tpr_5 466 499 IPR019734 GO:0005515
Phco3g01306 698 SMART tpr_5 534 567 IPR019734 GO:0005515
Phco3g01306 698 SMART tpr_5 233 266 IPR019734 GO:0005515
Phco3g01306 698 SMART tpr_5 420 453 IPR019734 GO:0005515
Phco3g01306 698 SMART tpr_5 267 300 IPR019734 GO:0005515
Phco3g01306 698 SMART tpr_5 301 333 IPR019734 GO:0005515
Phco3g01306 698 Pfam Tetratricopeptide repeat 502 532 IPR001440 GO:0005515
Phco3g01306 698 Gene3D Glutaredoxin 593 697 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g01306 Phco-Chr3 12467097 12470159 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g01306 3 12467097 12470159 Phco7g01142 7 9776180 9779425 PCT