Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g01137 ATGGACGCACACATCAGTGTCAAGATGTCAGAAAACAACAAGAGAAGCGCAGCAGCAGAGGAAGGAGAAACCAGGTTTGTTGGGATTCCCAATGCACCCAATCCAACACGGACACCACCATCCTGTCTCCGCGTCCTTCACCCTGACCACGTGGCCGTTGGGTCCCCCATTACCAAGGTTCCTCCATATTCACCACCACCATCTCCCTCTCCCAAATTCTGGTTAGACCATGACCCTTCCACTCTCTCTCACACCCACACCCACACCCACTTGGCCAATGATCCCTCACTGATATCAGATTTCTCCAAAATGAATCTCCTTGATCAAATCGGAACCAATGTGGACCCCTGTCCTTATTTTAATCAAACAGGAACCCTTCCAAACCCTTATGATTCTTGTTTCAATGAAACAGGAACCCTCCCATACGATCACCATGTCAACAATGCTCGCTTGTTCAATGAACAAGGAACCCTCTCCTATCATGTTAACAATGCGGGTTTGTTCAACGAGTCAGAGACTCTTCCTTATCACCACCATGTTAACAACGTTATCAATGAAACCGGGCCTCTCCTCCCGTATCACCACCATGTTAACAACGCGGGGCTGTTAGATAAAGGTTACACCTTTGATATCCCAGATGATCTCGTTAATCATGTGTATCCTCATCTCGTGGACCCGAGGAGGAATCAGTTACAGGCCAGTGGCAATTATCACATTTTTCGTGATCGTTATATGGCTCCACACTCTCCCAGAGGCTTCAAAAACCTCGTCAGGTTATCTCCAATTACGGCTATGAATTCCAATGCTAATAATCCTTCGCATTATTATGTTGCAGCGAAAGAGAAGACTGAACATCCTCACTTCCTGCCTCCGAGGAGACTCGGGGGAGACCCTGCCACTTTTAGGTGTGACAATAGCATTATCTTACAAGGGAGAGGTTCAAGACATTGCTTTGAGAAGGGGCATAGTTCTTCTTATAGAAGGGGTCCTACCCATGATGAGTTTTGTGTGAGTGGTAGTGTTTCCAAGAACCTTTTTCCTGGTGGTCCTTCTGGTCAAAACATTGGGGAACTTTCACTGCCCATGCCGCTGGATTATTATTCTGTTCCTGACTCTCAGTGTTACATTTACAACCTGGCAAAGGATCAGAACGGTTGTCGTTTCCTGCAGCGGAAGGTTGATGAGGGAAGCTTCGAAGATATGTGTATTGTATTTGAGGGAATCATTGGGAGTGTTGTTGAACTTATGGAGGATTCTTTTGGGAATTATCTTGTGCAGAAGTTGCTCGATGTTTGCACCGATTTCCAACGTCTGCAGATTGTGCTCATGTTGACTAATCGACCCGGCCAGCTCATTAGAATCTCTTTGAATACTCACGGGACGCGTGTGGTGCAGAAGTTGATTGAGACCCTCGATTCCGATGATCAAATTTCACTGGTCAAGTCTGCCATTCAACCGGGTTTTCTTGATCTTATCAAGGATCTGAATGGAAATCACGTCATTCAACGCTGCTTGCAATGCTTCAGCTGTCAAGATAATCAGTTTATCTTTGATGCTTCTGTGAAGTTTTGTATTGATATAGCTACTCATCAGCATGGATGCTGTGTACTGCAACGCTGTATTTATTACTCTATGGGTAAAAATCGAGATAGGCTGATCTCAGAAGTATGCAAACATGGACTTCTTCTCGCCCAGGATCCATTTGGAAATTATGTTGTTCAATATATTATAGAGACTGATACTCCAATTGCCGTCGCCGAAATGCTTGGTCAGTTTGAAGGGAATTATGTACATTTGTCTACACAGAAATTCAGCAGTCATGTGGTCGAAAAATGTCTGAGAAATGTAGCAGATACCAGGTCCAGGATAGTTCGAGAATTGCTGGCTGCTCCTCATTTTGAACGACTTTTGCAAGATCCATATGCCAATTATGTCATTCAATCTGCTCTCACCTTCACCAAGGGCCTTCTGCATGTTTCTTTGGTTGATGCAATTCGTAATTACAAAATGTTGCGCACCAGTCCATTTTGCAAGAGGATTTTCTCAGGAAATTTTCTGAGGAAGTGA 2067 0.4456 MDAHISVKMSENNKRSAAAEEGETRFVGIPNAPNPTRTPPSCLRVLHPDHVAVGSPITKVPPYSPPPSPSPKFWLDHDPSTLSHTHTHTHLANDPSLISDFSKMNLLDQIGTNVDPCPYFNQTGTLPNPYDSCFNETGTLPYDHHVNNARLFNEQGTLSYHVNNAGLFNESETLPYHHHVNNVINETGPLLPYHHHVNNAGLLDKGYTFDIPDDLVNHVYPHLVDPRRNQLQASGNYHIFRDRYMAPHSPRGFKNLVRLSPITAMNSNANNPSHYYVAAKEKTEHPHFLPPRRLGGDPATFRCDNSIILQGRGSRHCFEKGHSSSYRRGPTHDEFCVSGSVSKNLFPGGPSGQNIGELSLPMPLDYYSVPDSQCYIYNLAKDQNGCRFLQRKVDEGSFEDMCIVFEGIIGSVVELMEDSFGNYLVQKLLDVCTDFQRLQIVLMLTNRPGQLIRISLNTHGTRVVQKLIETLDSDDQISLVKSAIQPGFLDLIKDLNGNHVIQRCLQCFSCQDNQFIFDASVKFCIDIATHQHGCCVLQRCIYYSMGKNRDRLISEVCKHGLLLAQDPFGNYVVQYIIETDTPIAVAEMLGQFEGNYVHLSTQKFSSHVVEKCLRNVADTRSRIVRELLAAPHFERLLQDPYANYVIQSALTFTKGLLHVSLVDAIRNYKMLRTSPFCKRIFSGNFLRK 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g01137 688 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 347 688 IPR033133 GO:0003723
Phco7g01137 688 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 202 681 - -
Phco7g01137 688 Pfam Pumilio-family RNA binding repeat 595 628 IPR001313 GO:0003723
Phco7g01137 688 Pfam Pumilio-family RNA binding repeat 562 582 IPR001313 GO:0003723
Phco7g01137 688 Pfam Pumilio-family RNA binding repeat 488 518 IPR001313 GO:0003723
Phco7g01137 688 Pfam Pumilio-family RNA binding repeat 524 557 IPR001313 GO:0003723
Phco7g01137 688 Pfam Pumilio-family RNA binding repeat 412 441 IPR001313 GO:0003723
Phco7g01137 688 Pfam Pumilio-family RNA binding repeat 376 408 IPR001313 GO:0003723
Phco7g01137 688 Pfam Pumilio-family RNA binding repeat 636 651 IPR001313 GO:0003723
Phco7g01137 688 Pfam Pumilio-family RNA binding repeat 452 480 IPR001313 GO:0003723
Phco7g01137 688 ProSiteProfiles Pumilio RNA-binding repeat profile. 519 554 IPR001313 GO:0003723
Phco7g01137 688 Gene3D - 365 684 IPR011989 -
Phco7g01137 688 ProSiteProfiles Pumilio RNA-binding repeat profile. 591 629 IPR001313 GO:0003723
Phco7g01137 688 ProSiteProfiles Pumilio RNA-binding repeat profile. 446 481 IPR001313 GO:0003723
Phco7g01137 688 MobiDBLite consensus disorder prediction 1 21 - -
Phco7g01137 688 FunFam Pumilio homolog 9 362 688 - -
Phco7g01137 688 SMART pum_5 555 590 IPR001313 GO:0003723
Phco7g01137 688 SMART pum_5 591 625 IPR001313 GO:0003723
Phco7g01137 688 SMART pum_5 446 481 IPR001313 GO:0003723
Phco7g01137 688 SMART pum_5 407 442 IPR001313 GO:0003723
Phco7g01137 688 SMART pum_5 483 518 IPR001313 GO:0003723
Phco7g01137 688 SMART pum_5 371 406 IPR001313 GO:0003723
Phco7g01137 688 SMART pum_5 628 663 IPR001313 GO:0003723
Phco7g01137 688 SMART pum_5 519 554 IPR001313 GO:0003723
Phco7g01137 688 ProSiteProfiles Pumilio RNA-binding repeat profile. 555 590 IPR001313 GO:0003723
Phco7g01137 688 MobiDBLite consensus disorder prediction 1 38 - -
Phco7g01137 688 ProSiteProfiles Pumilio RNA-binding repeat profile. 483 518 IPR001313 GO:0003723
Phco7g01137 688 ProSiteProfiles Pumilio RNA-binding repeat profile. 407 443 IPR001313 GO:0003723
Phco7g01137 688 CDD Pumilio 374 682 IPR033712 GO:0003723
Phco7g01137 688 SUPERFAMILY ARM repeat 373 681 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g01137 Phco-Chr7 9716726 9719572 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g01137 7 9716726 9719572 Phco7g01137 7 9716726 9719572 ECH
Phco3g01303 3 12378603 12383285 Phco7g01137 7 9716726 9719572 PCT