Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g01303 ATGAGAAACGAAGAAGTTAGAGTTTGGTTGAATGGGTTTCCTAACCTTCACCATGCCAACGTCACCTCACAACCTTCCACTGCTCCCACCAACGCCTTTCCGATGTGGGGCGAAGACAACATGATCAACCACGACCATGATGTTGATGTCTTGCTGTCTAATGATTTTGCTAGAATGGGTGTTTTCGGTGAACAAGGAAATGGCGCTAACAAAACCAGAGGATATGGCCATGGACATGGACATAGATGTGGTGTTAATGTTATGGACTCATCGTACATACATGCATTCCCACCCTCGCACCCGTACTCACACCCATACTCACTCTCAAACTCACACTCACTCTCACTCTCACACACACCTCGTAGTTCTTCGGATGGATATGCACATGTCGGTGAAGAAAGGGGTGCCCTGTCGTCTGCTTGGGGTATGAAGCCTTCTTCTGATGTGAAGGGACACAGTTTTGGACCCCCAATGGAATTTAACCAAAGGAGGAACACTTGTTATAGAAACCTTCAAAGGCAGAACCCGTTTCATGCTAGAGGGCCATTTGCAAATTGGGAAATTAGGAGTCCCTTTATGCTCCCTCAAAGTTACCCCATGATGCAGCAATCCAAGCTTACTACGAATGTGAACAATCCATCGCCTCATTTTTTCCCTGCAGTGAAAGAAAGAGCACCAACAAGGGTGGTCGTAGCCCCCAGTGGTGAATTTTCCCATTCTAGAGGGGACCCTGTTGAGTTTCAATTTGATGGTGGGTTTATCATGCAAGAGAAGGATGTAAAATGGTGTGTTGGAGGTAAAGGGTGCAATTCTTTGAGGGCTTACAGAGGTAGTTTACCTTCGCCAGCTCAAGCAGTGCCAGATGAAGTTCCTCAATTCATTCCTTCTCGCGTTCCTGCTACTAGGCATGAAAATAATGGCATTCTTGCAAGTGATGCTTCTCTTTCTCCGCGGCCATTGTTGTTCAATTTTGGTCCTTTGGTTAAGTTCCAAGGTTACATTTATCACCTGGCAAAGGATCAGAACGGTTGTCGCTTCCTACAGAGGATGGTTGGTGAGGGCACCTCTGAAGATGCACAAATAGTGTTTAACGGAGTTATTGATGATGTTGTTGAGCTTATGATGGACCCTTTCGGGAATTACCTCGTGCAAAAGCTGATTGACGTGTGTGCTGAAGATGAAAGATTTCAGATTGTGTCAATGTTGACTAGAGAACCAGGGCAACTACTCAAAACCTCTTTCAATACCCACGGAACTCGGGTGGTTCAGAAATTGATTGCGACTGTCAACTCTAGAAATCAAATTGCATTGCTGAGGTCTGCTATTCAACCTGATTTTCTTGATCTTATTAAGGATCTCAACGGAAATCATGTTATACAACGTTGCTTGCAGTACTTTAGTTGTAAAGATAATGAGTTTATCTTTGATGCTGCTACAAATTTCTGTGTTGACATAGCTACTCATGAACATGGATGTTGTGTACTACAACGTTGCATTGATTACTCCACCGGAAAGTACCAAGATAAGCTGATACAGGAAATATGTAGACATGGGCTTATTCTTGCTCAAGATCCATTTGGAAATTACGTTGTTCAATATATTATAGAGATGGAGATCCCAAGTACCTCATCCACTCTGCATTTCCAGTTCAAAGGGAACTACGTAAACCTTTCCATGCAAAAATTTAGCAGTCATGTGGTTGAAAAATGCCTCATGCATATTGCAGAGAGCAGGTCCGGAATAGTCCAAGAAATGTTATCTTTTCCTCACTTTGAGCGGTTGCTACCAGACCCATATGCCAACTATGTTGTTCAACGTGCTCTCGGAGTGACCAAGGGTTCTCTGCATACATCTCTAGTGGAAGCAGTTCGACCCCACAAAATCTTGCGCACCAACCCCTATTGCAAAAGGATTTTCTCAAGGAACATACTTAATAAGTGA 1941 0.4374 MRNEEVRVWLNGFPNLHHANVTSQPSTAPTNAFPMWGEDNMINHDHDVDVLLSNDFARMGVFGEQGNGANKTRGYGHGHGHRCGVNVMDSSYIHAFPPSHPYSHPYSLSNSHSLSLSHTPRSSSDGYAHVGEERGALSSAWGMKPSSDVKGHSFGPPMEFNQRRNTCYRNLQRQNPFHARGPFANWEIRSPFMLPQSYPMMQQSKLTTNVNNPSPHFFPAVKERAPTRVVVAPSGEFSHSRGDPVEFQFDGGFIMQEKDVKWCVGGKGCNSLRAYRGSLPSPAQAVPDEVPQFIPSRVPATRHENNGILASDASLSPRPLLFNFGPLVKFQGYIYHLAKDQNGCRFLQRMVGEGTSEDAQIVFNGVIDDVVELMMDPFGNYLVQKLIDVCAEDERFQIVSMLTREPGQLLKTSFNTHGTRVVQKLIATVNSRNQIALLRSAIQPDFLDLIKDLNGNHVIQRCLQYFSCKDNEFIFDAATNFCVDIATHEHGCCVLQRCIDYSTGKYQDKLIQEICRHGLILAQDPFGNYVVQYIIEMEIPSTSSTLHFQFKGNYVNLSMQKFSSHVVEKCLMHIAESRSGIVQEMLSFPHFERLLPDPYANYVVQRALGVTKGSLHTSLVEAVRPHKILRTNPYCKRIFSRNILNK 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g01303 646 CDD Pumilio 332 641 IPR033712 GO:0003723
Phco3g01303 646 Gene3D - 323 644 IPR011989 -
Phco3g01303 646 SUPERFAMILY ARM repeat 329 640 IPR016024 -
Phco3g01303 646 SMART pum_5 404 439 IPR001313 GO:0003723
Phco3g01303 646 SMART pum_5 365 400 IPR001313 GO:0003723
Phco3g01303 646 SMART pum_5 549 583 IPR001313 GO:0003723
Phco3g01303 646 SMART pum_5 329 364 IPR001313 GO:0003723
Phco3g01303 646 SMART pum_5 586 621 IPR001313 GO:0003723
Phco3g01303 646 SMART pum_5 513 547 IPR001313 GO:0003723
Phco3g01303 646 SMART pum_5 441 476 IPR001313 GO:0003723
Phco3g01303 646 SMART pum_5 477 512 IPR001313 GO:0003723
Phco3g01303 646 ProSiteProfiles Pumilio RNA-binding repeat profile. 513 549 IPR001313 GO:0003723
Phco3g01303 646 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 304 646 IPR033133 GO:0003723
Phco3g01303 646 ProSiteProfiles Pumilio RNA-binding repeat profile. 441 476 IPR001313 GO:0003723
Phco3g01303 646 ProSiteProfiles Pumilio RNA-binding repeat profile. 401 439 IPR001313 GO:0003723
Phco3g01303 646 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 101 641 - -
Phco3g01303 646 MobiDBLite consensus disorder prediction 107 124 - -
Phco3g01303 646 MobiDBLite consensus disorder prediction 107 129 - -
Phco3g01303 646 ProSiteProfiles Pumilio RNA-binding repeat profile. 477 512 IPR001313 GO:0003723
Phco3g01303 646 Pfam Pumilio-family RNA binding repeat 370 402 IPR001313 GO:0003723
Phco3g01303 646 Pfam Pumilio-family RNA binding repeat 553 574 IPR001313 GO:0003723
Phco3g01303 646 Pfam Pumilio-family RNA binding repeat 414 436 IPR001313 GO:0003723
Phco3g01303 646 Pfam Pumilio-family RNA binding repeat 334 364 IPR001313 GO:0003723
Phco3g01303 646 Pfam Pumilio-family RNA binding repeat 521 536 IPR001313 GO:0003723
Phco3g01303 646 Pfam Pumilio-family RNA binding repeat 446 476 IPR001313 GO:0003723
Phco3g01303 646 Pfam Pumilio-family RNA binding repeat 482 515 IPR001313 GO:0003723
Phco3g01303 646 Pfam Pumilio-family RNA binding repeat 597 608 IPR001313 GO:0003723
Phco3g01303 646 ProSiteProfiles Pumilio RNA-binding repeat profile. 584 621 IPR001313 GO:0003723
Phco3g01303 646 ProSiteProfiles Pumilio RNA-binding repeat profile. 329 364 IPR001313 GO:0003723
Phco3g01303 646 ProSiteProfiles Pumilio RNA-binding repeat profile. 365 400 IPR001313 GO:0003723
Phco3g01303 646 FunFam Pumilio homolog 9 322 646 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g01303 Phco-Chr3 12378603 12383285 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g01303 3 12378603 12383285 Phco3g01303 3 12378603 12383285 ECH
Phco3g01303 3 12378603 12383285 Phco7g01137 7 9716726 9719572 PCT